Protein–RNA interactions for Protein: Q15475

SIX1, Homeobox protein SIX1, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX1Q15475 CYB5AP4-201ENST00000396692 399 ntBASIC4.44□□□□□ -1.7
SIX1Q15475 RPL23AP59-201ENST00000399415 461 ntBASIC4.44□□□□□ -1.7
SIX1Q15475 RPS24P12-201ENST00000402084 394 ntBASIC4.44□□□□□ -1.7
SIX1Q15475 RNA5SP296-201ENST00000410523 111 ntBASIC4.44□□□□□ -1.7
SIX1Q15475 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC4.44□□□□□ -1.7
SIX1Q15475 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC4.44□□□□□ -1.7
SIX1Q15475 AL161631.1-201ENST00000417933 486 ntBASIC4.44□□□□□ -1.7
SIX1Q15475 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC4.44□□□□□ -1.7
SIX1Q15475 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC4.44□□□□□ -1.7
SIX1Q15475 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC4.44□□□□□ -1.7
SIX1Q15475 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC4.44□□□□□ -1.7
SIX1Q15475 CEACAMP9-201ENST00000442990 513 ntBASIC4.44□□□□□ -1.7
SIX1Q15475 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.44□□□□□ -1.7
SIX1Q15475 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.44□□□□□ -1.7
SIX1Q15475 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC4.44□□□□□ -1.7
SIX1Q15475 CCRL1P1-201ENST00000449542 1053 ntBASIC4.44□□□□□ -1.7
SIX1Q15475 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC4.44□□□□□ -1.7
SIX1Q15475 RN7SL205P-201ENST00000490174 284 ntBASIC4.44□□□□□ -1.7
SIX1Q15475 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC4.44□□□□□ -1.7
SIX1Q15475 RN7SL812P-201ENST00000493791 279 ntBASIC4.44□□□□□ -1.7
SIX1Q15475 SSR3-208ENST00000496050 579 ntTSL 4 BASIC4.44□□□□□ -1.7
SIX1Q15475 AC025445.1-201ENST00000502728 300 ntBASIC4.44□□□□□ -1.7
SIX1Q15475 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.44□□□□□ -1.7
SIX1Q15475 FABP5P6-201ENST00000510588 409 ntBASIC4.44□□□□□ -1.7
SIX1Q15475 AL671862.1-201ENST00000515851 349 ntBASIC4.44□□□□□ -1.7
SIX1Q15475 RNU6-889P-201ENST00000517189 103 ntBASIC4.44□□□□□ -1.7
SIX1Q15475 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.44□□□□□ -1.7
SIX1Q15475 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC4.44□□□□□ -1.7
SIX1Q15475 AC007599.1-201ENST00000568688 1174 ntBASIC4.44□□□□□ -1.7
SIX1Q15475 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.44□□□□□ -1.7
SIX1Q15475 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.44□□□□□ -1.7
SIX1Q15475 AL355802.4-201ENST00000607635 548 ntBASIC4.44□□□□□ -1.7
SIX1Q15475 AC135803.1-201ENST00000608748 565 ntBASIC4.44□□□□□ -1.7
SIX1Q15475 AL161616.1-201ENST00000611867 286 ntBASIC4.44□□□□□ -1.7
SIX1Q15475 RN7SL722P-201ENST00000617780 284 ntBASIC4.44□□□□□ -1.7
SIX1Q15475 RN7SL565P-201ENST00000618246 284 ntBASIC4.44□□□□□ -1.7
SIX1Q15475 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.44□□□□□ -1.7
SIX1Q15475 AL356317.1-201ENST00000396110 1436 ntBASIC4.44□□□□□ -1.7
SIX1Q15475 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
SIX1Q15475 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SIX1Q15475 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC4.44□□□□□ -1.7
SIX1Q15475 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
SIX1Q15475 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.44□□□□□ -1.7
SIX1Q15475 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
SIX1Q15475 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.43□□□□□ -1.7
SIX1Q15475 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
SIX1Q15475 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
SIX1Q15475 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.43□□□□□ -1.7
SIX1Q15475 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.43□□□□□ -1.7
SIX1Q15475 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
SIX1Q15475 MIR331-201ENST00000362302 94 ntBASIC4.43□□□□□ -1.7
SIX1Q15475 RPS4XP9-201ENST00000405151 780 ntBASIC4.43□□□□□ -1.7
SIX1Q15475 RNU2-50P-201ENST00000410494 143 ntBASIC4.43□□□□□ -1.7
SIX1Q15475 RNA5SP104-201ENST00000410989 118 ntBASIC4.43□□□□□ -1.7
SIX1Q15475 RNA5SP306-201ENST00000411087 107 ntBASIC4.43□□□□□ -1.7
SIX1Q15475 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
SIX1Q15475 AC245028.1-201ENST00000423259 256 ntBASIC4.43□□□□□ -1.7
SIX1Q15475 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.43□□□□□ -1.7
SIX1Q15475 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC4.43□□□□□ -1.7
SIX1Q15475 ZNF736P1Y-201ENST00000440402 1276 ntBASIC4.43□□□□□ -1.7
SIX1Q15475 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.43□□□□□ -1.7
SIX1Q15475 VN1R48P-201ENST00000448149 1036 ntBASIC4.43□□□□□ -1.7
SIX1Q15475 BUD31P2-201ENST00000449374 300 ntBASIC4.43□□□□□ -1.7
SIX1Q15475 RPL21P126-201ENST00000470049 478 ntBASIC4.43□□□□□ -1.7
SIX1Q15475 AC006463.2-201ENST00000473326 348 ntBASIC4.43□□□□□ -1.7
SIX1Q15475 AC006517.1-201ENST00000480485 328 ntBASIC4.43□□□□□ -1.7
SIX1Q15475 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC4.43□□□□□ -1.7
SIX1Q15475 AC139783.2-201ENST00000504847 1145 ntBASIC4.43□□□□□ -1.7
SIX1Q15475 AC017037.1-201ENST00000508460 471 ntBASIC4.43□□□□□ -1.7
SIX1Q15475 PGBD4P4-201ENST00000509673 613 ntBASIC4.43□□□□□ -1.7
SIX1Q15475 AC025768.1-201ENST00000510057 267 ntBASIC4.43□□□□□ -1.7
SIX1Q15475 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.43□□□□□ -1.7
SIX1Q15475 HMGB1P47-201ENST00000511281 589 ntBASIC4.43□□□□□ -1.7
SIX1Q15475 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC4.43□□□□□ -1.7
SIX1Q15475 AC067904.2-201ENST00000517322 1283 ntBASIC4.43□□□□□ -1.7
SIX1Q15475 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.43□□□□□ -1.7
SIX1Q15475 UBTFL9-201ENST00000534504 1148 ntBASIC4.43□□□□□ -1.7
SIX1Q15475 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.43□□□□□ -1.7
SIX1Q15475 AC137768.1-201ENST00000549998 553 ntBASIC4.43□□□□□ -1.7
SIX1Q15475 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC4.43□□□□□ -1.7
SIX1Q15475 MIR4330-201ENST00000579077 105 ntBASIC4.43□□□□□ -1.7
SIX1Q15475 AC069061.3-201ENST00000582254 823 ntBASIC4.43□□□□□ -1.7
SIX1Q15475 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.43□□□□□ -1.7
SIX1Q15475 AL671309.1-201ENST00000603750 544 ntBASIC4.43□□□□□ -1.7
SIX1Q15475 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC4.43□□□□□ -1.7
SIX1Q15475 AC012409.3-201ENST00000611343 981 ntBASIC4.43□□□□□ -1.7
SIX1Q15475 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
SIX1Q15475 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
SIX1Q15475 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC4.43□□□□□ -1.7
SIX1Q15475 DHX40P1-201ENST00000588725 1412 ntBASIC4.43□□□□□ -1.7
SIX1Q15475 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
SIX1Q15475 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC4.43□□□□□ -1.7
SIX1Q15475 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
SIX1Q15475 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.43□□□□□ -1.7
SIX1Q15475 NEAT1-202ENST00000501122 22743 ntBASIC4.43□□□□□ -1.7
SIX1Q15475 AL592148.3-201ENST00000608771 2646 ntBASIC4.42□□□□□ -1.7
SIX1Q15475 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.42□□□□□ -1.7
SIX1Q15475 AC010300.1-201ENST00000600671 5134 ntBASIC4.42□□□□□ -1.7
SIX1Q15475 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SIX1Q15475 AC120338.1-201ENST00000625074 1541 ntBASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms