Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 RN7SKP265-201ENST00000516448 223 ntBASIC5.04□□□□□ -1.6
PTPN9P43378 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC5.04□□□□□ -1.6
PTPN9P43378 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC5.04□□□□□ -1.6
PTPN9P43378 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.04□□□□□ -1.6
PTPN9P43378 AC021006.3-201ENST00000530771 192 ntBASIC5.04□□□□□ -1.6
PTPN9P43378 AC025260.1-201ENST00000548858 430 ntBASIC5.04□□□□□ -1.6
PTPN9P43378 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC5.04□□□□□ -1.6
PTPN9P43378 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC5.04□□□□□ -1.6
PTPN9P43378 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC5.04□□□□□ -1.6
PTPN9P43378 AC095057.3-201ENST00000567102 1157 ntBASIC5.04□□□□□ -1.6
PTPN9P43378 RN7SL802P-201ENST00000577858 299 ntBASIC5.04□□□□□ -1.6
PTPN9P43378 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC5.04□□□□□ -1.6
PTPN9P43378 AL445435.1-201ENST00000604232 665 ntBASIC5.04□□□□□ -1.6
PTPN9P43378 AC133644.2-201ENST00000608142 540 ntBASIC5.04□□□□□ -1.6
PTPN9P43378 STMN1P1-201ENST00000617809 440 ntBASIC5.04□□□□□ -1.6
PTPN9P43378 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC5.04□□□□□ -1.6
PTPN9P43378 LINC01808-202ENST00000641680 1116 ntBASIC5.04□□□□□ -1.6
PTPN9P43378 AC139713.2-210ENST00000641741 992 ntBASIC5.04□□□□□ -1.6
PTPN9P43378 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
PTPN9P43378 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
PTPN9P43378 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
PTPN9P43378 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC5.04□□□□□ -1.6
PTPN9P43378 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
PTPN9P43378 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
PTPN9P43378 TLK1P1-201ENST00000456760 2440 ntBASIC5.04□□□□□ -1.6
PTPN9P43378 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.04□□□□□ -1.6
PTPN9P43378 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
PTPN9P43378 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
PTPN9P43378 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
PTPN9P43378 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
PTPN9P43378 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
PTPN9P43378 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
PTPN9P43378 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC5.03□□□□□ -1.6
PTPN9P43378 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
PTPN9P43378 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
PTPN9P43378 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
PTPN9P43378 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.03□□□□□ -1.6
PTPN9P43378 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
PTPN9P43378 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC5.03□□□□□ -1.6
PTPN9P43378 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
PTPN9P43378 UBBP2-201ENST00000376781 231 ntBASIC5.03□□□□□ -1.6
PTPN9P43378 SNORA51.8-201ENST00000384234 132 ntBASIC5.03□□□□□ -1.6
PTPN9P43378 SNORD65C-201ENST00000390962 71 ntBASIC5.03□□□□□ -1.6
PTPN9P43378 U3.30-201ENST00000391308 210 ntBASIC5.03□□□□□ -1.6
PTPN9P43378 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
PTPN9P43378 SLC4A1APP1-201ENST00000419995 602 ntBASIC5.03□□□□□ -1.6
PTPN9P43378 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC5.03□□□□□ -1.6
PTPN9P43378 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC5.03□□□□□ -1.6
PTPN9P43378 HMGB3P5-201ENST00000428894 612 ntBASIC5.03□□□□□ -1.6
PTPN9P43378 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC5.03□□□□□ -1.6
PTPN9P43378 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC5.03□□□□□ -1.6
PTPN9P43378 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC5.03□□□□□ -1.6
PTPN9P43378 MRPL48P1-201ENST00000445390 636 ntBASIC5.03□□□□□ -1.6
PTPN9P43378 AL035551.1-201ENST00000446931 348 ntBASIC5.03□□□□□ -1.6
PTPN9P43378 EIF2S2P2-201ENST00000447161 982 ntBASIC5.03□□□□□ -1.6
PTPN9P43378 AC234781.3-201ENST00000452540 973 ntBASIC5.03□□□□□ -1.6
PTPN9P43378 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC5.03□□□□□ -1.6
PTPN9P43378 RNU7-27P-201ENST00000459281 62 ntBASIC5.03□□□□□ -1.6
PTPN9P43378 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC5.03□□□□□ -1.6
PTPN9P43378 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
PTPN9P43378 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC5.03□□□□□ -1.6
PTPN9P43378 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC5.03□□□□□ -1.6
PTPN9P43378 HMGB1P1-201ENST00000522557 636 ntBASIC5.03□□□□□ -1.6
PTPN9P43378 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC5.03□□□□□ -1.6
PTPN9P43378 AC087897.1-201ENST00000550134 156 ntBASIC5.03□□□□□ -1.6
PTPN9P43378 EDDM3DP-201ENST00000554692 434 ntBASIC5.03□□□□□ -1.6
PTPN9P43378 MTCYBP23-201ENST00000558717 1102 ntBASIC5.03□□□□□ -1.6
PTPN9P43378 BGLT3-201ENST00000564523 994 ntBASIC5.03□□□□□ -1.6
PTPN9P43378 ATP5F1P7-201ENST00000567330 760 ntBASIC5.03□□□□□ -1.6
PTPN9P43378 AGGF1P5-201ENST00000567900 919 ntBASIC5.03□□□□□ -1.6
PTPN9P43378 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC5.03□□□□□ -1.6
PTPN9P43378 AC022726.1-201ENST00000587475 207 ntBASIC5.03□□□□□ -1.6
PTPN9P43378 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC5.03□□□□□ -1.6
PTPN9P43378 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC5.03□□□□□ -1.6
PTPN9P43378 BNIP3P32-201ENST00000600015 554 ntBASIC5.03□□□□□ -1.6
PTPN9P43378 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC5.03□□□□□ -1.6
PTPN9P43378 AC024060.1-201ENST00000607052 494 ntBASIC5.03□□□□□ -1.6
PTPN9P43378 AL157392.4-201ENST00000609756 345 ntBASIC5.03□□□□□ -1.6
PTPN9P43378 AC087385.3-201ENST00000620477 187 ntBASIC5.03□□□□□ -1.6
PTPN9P43378 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC5.03□□□□□ -1.6
PTPN9P43378 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
PTPN9P43378 AC027228.2-201ENST00000567141 2154 ntBASIC5.03□□□□□ -1.6
PTPN9P43378 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
PTPN9P43378 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.03□□□□□ -1.6
PTPN9P43378 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC5.03□□□□□ -1.6
PTPN9P43378 AC000123.3-201ENST00000624029 4975 ntBASIC5.03□□□□□ -1.6
PTPN9P43378 Z95327.2-201ENST00000414579 1873 ntBASIC5.03□□□□□ -1.6
PTPN9P43378 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
PTPN9P43378 IRF5P1-201ENST00000504852 2164 ntBASIC5.02□□□□□ -1.61
PTPN9P43378 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
PTPN9P43378 NCLP2-201ENST00000416078 1462 ntBASIC5.02□□□□□ -1.61
PTPN9P43378 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.02□□□□□ -1.61
PTPN9P43378 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
PTPN9P43378 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
PTPN9P43378 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC5.02□□□□□ -1.61
PTPN9P43378 GNAS-202ENST00000306090 477 ntTSL 5 BASIC5.02□□□□□ -1.61
PTPN9P43378 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC5.02□□□□□ -1.61
PTPN9P43378 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
PTPN9P43378 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC5.02□□□□□ -1.61
PTPN9P43378 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms