Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
MSX2P35548 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSX2P35548 PRELID1P1-201ENST00000403549 660 ntBASIC5.37□□□□□ -1.55
MSX2P35548 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
MSX2P35548 AL139805.1-201ENST00000407837 289 ntBASIC5.37□□□□□ -1.55
MSX2P35548 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.37□□□□□ -1.55
MSX2P35548 RPS15AP38-201ENST00000413110 372 ntBASIC5.37□□□□□ -1.55
MSX2P35548 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC5.37□□□□□ -1.55
MSX2P35548 AC130360.1-201ENST00000425489 1117 ntBASIC5.37□□□□□ -1.55
MSX2P35548 HMGN2P27-201ENST00000427352 270 ntBASIC5.37□□□□□ -1.55
MSX2P35548 HMGB1P45-201ENST00000435986 653 ntBASIC5.37□□□□□ -1.55
MSX2P35548 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC5.37□□□□□ -1.55
MSX2P35548 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC5.37□□□□□ -1.55
MSX2P35548 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC5.37□□□□□ -1.55
MSX2P35548 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC5.37□□□□□ -1.55
MSX2P35548 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC5.37□□□□□ -1.55
MSX2P35548 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC5.37□□□□□ -1.55
MSX2P35548 RNA5SP269-201ENST00000459032 137 ntBASIC5.37□□□□□ -1.55
MSX2P35548 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC5.37□□□□□ -1.55
MSX2P35548 IMPA1P1-201ENST00000510718 842 ntBASIC5.37□□□□□ -1.55
MSX2P35548 RNU6-528P-201ENST00000516926 100 ntBASIC5.37□□□□□ -1.55
MSX2P35548 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC5.37□□□□□ -1.55
MSX2P35548 AC139365.2-201ENST00000517972 253 ntBASIC5.37□□□□□ -1.55
MSX2P35548 CA1-215ENST00000522389 551 ntTSL 3 BASIC5.37□□□□□ -1.55
MSX2P35548 AC018442.3-201ENST00000523025 183 ntBASIC5.37□□□□□ -1.55
MSX2P35548 AC130365.2-201ENST00000525882 1201 ntBASIC5.37□□□□□ -1.55
MSX2P35548 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC5.37□□□□□ -1.55
MSX2P35548 AC124293.1-201ENST00000530034 493 ntBASIC5.37□□□□□ -1.55
MSX2P35548 AC118273.2-201ENST00000532092 465 ntBASIC5.37□□□□□ -1.55
MSX2P35548 AP002373.2-201ENST00000541631 1060 ntBASIC5.37□□□□□ -1.55
MSX2P35548 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.37□□□□□ -1.55
MSX2P35548 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC5.37□□□□□ -1.55
MSX2P35548 AC091078.2-201ENST00000557145 559 ntBASIC5.37□□□□□ -1.55
MSX2P35548 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.37□□□□□ -1.55
MSX2P35548 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC5.37□□□□□ -1.55
MSX2P35548 OR4K7P-201ENST00000580232 945 ntBASIC5.37□□□□□ -1.55
MSX2P35548 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC5.37□□□□□ -1.55
MSX2P35548 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC5.37□□□□□ -1.55
MSX2P35548 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC5.37□□□□□ -1.55
MSX2P35548 AC011453.2-201ENST00000603737 729 ntBASIC5.37□□□□□ -1.55
MSX2P35548 AC004948.1-201ENST00000609858 672 ntBASIC5.37□□□□□ -1.55
MSX2P35548 AC106028.5-201ENST00000610332 395 ntBASIC5.37□□□□□ -1.55
MSX2P35548 Z95327.3-201ENST00000610385 572 ntBASIC5.37□□□□□ -1.55
MSX2P35548 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.37□□□□□ -1.55
MSX2P35548 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC5.37□□□□□ -1.55
MSX2P35548 U4.5-201ENST00000617137 123 ntBASIC5.37□□□□□ -1.55
MSX2P35548 STMN1P1-201ENST00000617809 440 ntBASIC5.37□□□□□ -1.55
MSX2P35548 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC5.37□□□□□ -1.55
MSX2P35548 AC012414.7-202ENST00000622705 1090 ntBASIC5.37□□□□□ -1.55
MSX2P35548 TEX41-293ENST00000630451 690 ntTSL 5 BASIC5.37□□□□□ -1.55
MSX2P35548 AC119674.1-212ENST00000641155 993 ntBASIC5.37□□□□□ -1.55
MSX2P35548 SLC10A5P1-201ENST00000379063 1306 ntBASIC5.37□□□□□ -1.55
MSX2P35548 ATP5A1P1-201ENST00000454088 1321 ntBASIC5.37□□□□□ -1.55
MSX2P35548 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
MSX2P35548 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
MSX2P35548 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC5.37□□□□□ -1.55
MSX2P35548 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.37□□□□□ -1.55
MSX2P35548 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSX2P35548 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
MSX2P35548 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.37□□□□□ -1.55
MSX2P35548 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
MSX2P35548 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSX2P35548 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSX2P35548 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.37□□□□□ -1.55
MSX2P35548 NSRP1P1-201ENST00000444067 1693 ntBASIC5.37□□□□□ -1.55
MSX2P35548 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSX2P35548 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSX2P35548 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC5.37□□□□□ -1.55
MSX2P35548 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.37□□□□□ -1.55
MSX2P35548 AL606537.1-201ENST00000607258 2011 ntBASIC5.36□□□□□ -1.55
MSX2P35548 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSX2P35548 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.36□□□□□ -1.55
MSX2P35548 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSX2P35548 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.36□□□□□ -1.55
MSX2P35548 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
MSX2P35548 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC5.36□□□□□ -1.55
MSX2P35548 AC016716.1-201ENST00000265882 708 ntBASIC5.36□□□□□ -1.55
MSX2P35548 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
MSX2P35548 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSX2P35548 SNORA64.3-201ENST00000365647 134 ntBASIC5.36□□□□□ -1.55
MSX2P35548 RNU4-31P-201ENST00000384211 141 ntBASIC5.36□□□□□ -1.55
MSX2P35548 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
MSX2P35548 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
MSX2P35548 SNORD65.1-201ENST00000390889 71 ntBASIC5.36□□□□□ -1.55
MSX2P35548 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSX2P35548 PEX12P1-201ENST00000400284 1048 ntBASIC5.36□□□□□ -1.55
MSX2P35548 RN7SKP263-201ENST00000411194 309 ntBASIC5.36□□□□□ -1.55
MSX2P35548 RPS7P13-201ENST00000413955 498 ntBASIC5.36□□□□□ -1.55
MSX2P35548 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC5.36□□□□□ -1.55
MSX2P35548 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSX2P35548 MRPS36P1-201ENST00000421291 307 ntBASIC5.36□□□□□ -1.55
MSX2P35548 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC5.36□□□□□ -1.55
MSX2P35548 ZNF863P-201ENST00000426746 417 ntBASIC5.36□□□□□ -1.55
MSX2P35548 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC5.36□□□□□ -1.55
MSX2P35548 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC5.36□□□□□ -1.55
MSX2P35548 AL136231.1-201ENST00000429407 730 ntBASIC5.36□□□□□ -1.55
MSX2P35548 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC5.36□□□□□ -1.55
MSX2P35548 TMEM183AP1-205ENST00000432739 290 ntBASIC5.36□□□□□ -1.55
MSX2P35548 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC5.36□□□□□ -1.55
MSX2P35548 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms