Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 NUMB-232ENST00000560335 1586 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
MSX1P28360 AF287957.1-201ENST00000607368 1595 ntBASIC6.45□□□□□ -1.38
MSX1P28360 PPP4R3CP-201ENST00000412172 3131 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
MSX1P28360 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
MSX1P28360 NXPE3-203ENST00000477909 3450 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
MSX1P28360 AL512646.1-201ENST00000269395 1077 ntBASIC6.45□□□□□ -1.38
MSX1P28360 MAPK14-203ENST00000310795 1066 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
MSX1P28360 Y_RNA.339-201ENST00000365325 102 ntBASIC6.45□□□□□ -1.38
MSX1P28360 MIR514A2-201ENST00000385131 88 ntBASIC6.45□□□□□ -1.38
MSX1P28360 MIR514A3-201ENST00000385132 88 ntBASIC6.45□□□□□ -1.38
MSX1P28360 SNORD37.1-201ENST00000390968 65 ntBASIC6.45□□□□□ -1.38
MSX1P28360 RNA5SP53-201ENST00000391299 120 ntBASIC6.45□□□□□ -1.38
MSX1P28360 TPMTP2-201ENST00000414372 726 ntBASIC6.45□□□□□ -1.38
MSX1P28360 AC009302.1-201ENST00000417147 390 ntBASIC6.45□□□□□ -1.38
MSX1P28360 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC6.45□□□□□ -1.38
MSX1P28360 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC6.45□□□□□ -1.38
MSX1P28360 TUBB4BP6-201ENST00000437576 479 ntBASIC6.45□□□□□ -1.38
MSX1P28360 AC004980.3-201ENST00000447046 365 ntBASIC6.45□□□□□ -1.38
MSX1P28360 AC073415.1-201ENST00000449240 153 ntBASIC6.45□□□□□ -1.38
MSX1P28360 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC6.45□□□□□ -1.38
MSX1P28360 AL157896.1-201ENST00000451617 790 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
MSX1P28360 HMGB3P22-202ENST00000451823 572 ntBASIC6.45□□□□□ -1.38
MSX1P28360 RN7SL790P-201ENST00000474043 298 ntBASIC6.45□□□□□ -1.38
MSX1P28360 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC6.45□□□□□ -1.38
MSX1P28360 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC6.45□□□□□ -1.38
MSX1P28360 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
MSX1P28360 OR4D12P-201ENST00000509361 911 ntBASIC6.45□□□□□ -1.38
MSX1P28360 FAM206BP-201ENST00000510179 541 ntBASIC6.45□□□□□ -1.38
MSX1P28360 AC092674.1-201ENST00000513871 571 ntTSL 4 BASIC6.45□□□□□ -1.38
MSX1P28360 RNU4-29P-201ENST00000515943 174 ntBASIC6.45□□□□□ -1.38
MSX1P28360 AC104986.1-201ENST00000517978 436 ntBASIC6.45□□□□□ -1.38
MSX1P28360 GRPEL2-AS1-201ENST00000521295 401 ntTSL 3 BASIC6.45□□□□□ -1.38
MSX1P28360 AF279873.1-201ENST00000523393 313 ntBASIC6.45□□□□□ -1.38
MSX1P28360 MRPS16P1-201ENST00000523462 412 ntBASIC6.45□□□□□ -1.38
MSX1P28360 APOOP3-201ENST00000536787 586 ntBASIC6.45□□□□□ -1.38
MSX1P28360 AC156455.1-201ENST00000538790 851 ntTSL 2 BASIC6.45□□□□□ -1.38
MSX1P28360 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC6.45□□□□□ -1.38
MSX1P28360 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC6.45□□□□□ -1.38
MSX1P28360 AL161670.1-201ENST00000554348 137 ntBASIC6.45□□□□□ -1.38
MSX1P28360 AC016526.1-201ENST00000555465 520 ntTSL 3 BASIC6.45□□□□□ -1.38
MSX1P28360 NCAPGP2-201ENST00000557911 754 ntBASIC6.45□□□□□ -1.38
MSX1P28360 AC090181.1-201ENST00000560446 264 ntTSL 3 BASIC6.45□□□□□ -1.38
MSX1P28360 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC6.45□□□□□ -1.38
MSX1P28360 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC6.45□□□□□ -1.38
MSX1P28360 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC6.45□□□□□ -1.38
MSX1P28360 AC005014.2-201ENST00000607795 599 ntBASIC6.45□□□□□ -1.38
MSX1P28360 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC6.45□□□□□ -1.38
MSX1P28360 RMST_9.1-201ENST00000619945 193 ntBASIC6.45□□□□□ -1.38
MSX1P28360 AC012629.3-201ENST00000623397 328 ntBASIC6.45□□□□□ -1.38
MSX1P28360 MIR548A1HG-202ENST00000637804 784 ntTSL 5 BASIC6.45□□□□□ -1.38
MSX1P28360 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC6.45□□□□□ -1.38
MSX1P28360 CASP10-208ENST00000448480 1603 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
MSX1P28360 MROH3P-201ENST00000435735 2676 ntBASIC6.45□□□□□ -1.38
MSX1P28360 AC092111.1-201ENST00000618256 3358 ntBASIC6.45□□□□□ -1.38
MSX1P28360 ZNF480-201ENST00000334564 1843 ntAPPRIS ALT2 TSL 2 BASIC6.45□□□□□ -1.38
MSX1P28360 TGFB2-202ENST00000366930 4969 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
MSX1P28360 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC6.45□□□□□ -1.38
MSX1P28360 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC6.45□□□□□ -1.38
MSX1P28360 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
MSX1P28360 EIF4E2-207ENST00000409514 3525 ntTSL 5 BASIC6.45□□□□□ -1.38
MSX1P28360 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
MSX1P28360 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
MSX1P28360 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
MSX1P28360 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
MSX1P28360 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
MSX1P28360 PPARGC1A-217ENST00000613098 3210 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
MSX1P28360 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
MSX1P28360 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC6.44□□□□□ -1.38
MSX1P28360 ARCN1-201ENST00000264028 3845 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
MSX1P28360 TIA1-201ENST00000282574 3823 ntTSL 5 BASIC6.44□□□□□ -1.38
MSX1P28360 NR5A2-206ENST00000544748 4775 ntAPPRIS ALT1 TSL 2 BASIC6.44□□□□□ -1.38
MSX1P28360 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC6.44□□□□□ -1.38
MSX1P28360 AC079178.2-201ENST00000439323 1624 ntBASIC6.44□□□□□ -1.38
MSX1P28360 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC6.44□□□□□ -1.38
MSX1P28360 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
MSX1P28360 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC6.44□□□□□ -1.38
MSX1P28360 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
MSX1P28360 FOXP2-201ENST00000350908 2638 ntAPPRIS P2 TSL 1 (best) BASIC6.44□□□□□ -1.38
MSX1P28360 KIAA0391-203ENST00000534898 2611 ntAPPRIS P3 TSL 1 (best) BASIC6.44□□□□□ -1.38
MSX1P28360 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC6.44□□□□□ -1.38
MSX1P28360 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
MSX1P28360 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
MSX1P28360 RPL23AP57-201ENST00000332361 466 ntBASIC6.44□□□□□ -1.38
MSX1P28360 SNORA70.5-201ENST00000365519 135 ntBASIC6.44□□□□□ -1.38
MSX1P28360 RNU6-606P-201ENST00000384721 111 ntBASIC6.44□□□□□ -1.38
MSX1P28360 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
MSX1P28360 MIR1204-201ENST00000408388 67 ntBASIC6.44□□□□□ -1.38
MSX1P28360 RNU4-61P-201ENST00000411243 107 ntBASIC6.44□□□□□ -1.38
MSX1P28360 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC6.44□□□□□ -1.38
MSX1P28360 Z82198.3-201ENST00000421145 199 ntBASIC6.44□□□□□ -1.38
MSX1P28360 AC007283.2-201ENST00000424739 197 ntBASIC6.44□□□□□ -1.38
MSX1P28360 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC6.44□□□□□ -1.38
MSX1P28360 PUDPP2-201ENST00000431423 643 ntBASIC6.44□□□□□ -1.38
MSX1P28360 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC6.44□□□□□ -1.38
MSX1P28360 LINC00390-201ENST00000432331 340 ntTSL 5 BASIC6.44□□□□□ -1.38
MSX1P28360 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC6.44□□□□□ -1.38
MSX1P28360 AL845321.1-201ENST00000444603 348 ntBASIC6.44□□□□□ -1.38
MSX1P28360 GOT2P2-201ENST00000450663 1251 ntBASIC6.44□□□□□ -1.38
MSX1P28360 AC013727.1-202ENST00000455716 580 ntTSL 4 BASIC6.44□□□□□ -1.38
MSX1P28360 OR9A1P-202ENST00000484361 945 ntBASIC6.44□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms