Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC3.33□□□□□ -1.88
HLA-DMBP28068 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC3.33□□□□□ -1.88
HLA-DMBP28068 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HLA-DMBP28068 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC3.33□□□□□ -1.88
HLA-DMBP28068 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC3.33□□□□□ -1.88
HLA-DMBP28068 AC099063.2-201ENST00000446360 662 ntBASIC3.33□□□□□ -1.88
HLA-DMBP28068 AC243772.1-201ENST00000451620 410 ntBASIC3.33□□□□□ -1.88
HLA-DMBP28068 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC3.33□□□□□ -1.88
HLA-DMBP28068 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC3.33□□□□□ -1.88
HLA-DMBP28068 OR52A4P-201ENST00000472867 958 ntBASIC3.33□□□□□ -1.88
HLA-DMBP28068 RN7SL860P-201ENST00000473738 223 ntBASIC3.33□□□□□ -1.88
HLA-DMBP28068 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HLA-DMBP28068 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC3.33□□□□□ -1.88
HLA-DMBP28068 HPRT1P1-201ENST00000509498 657 ntBASIC3.33□□□□□ -1.88
HLA-DMBP28068 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HLA-DMBP28068 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC3.33□□□□□ -1.88
HLA-DMBP28068 IGKV1OR2-1-201ENST00000514060 354 ntBASIC3.33□□□□□ -1.88
HLA-DMBP28068 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC3.33□□□□□ -1.88
HLA-DMBP28068 C1GALT1P3-201ENST00000522049 819 ntBASIC3.33□□□□□ -1.88
HLA-DMBP28068 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC3.33□□□□□ -1.88
HLA-DMBP28068 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC3.33□□□□□ -1.88
HLA-DMBP28068 MTND2P13-201ENST00000577438 1039 ntBASIC3.33□□□□□ -1.88
HLA-DMBP28068 MIR4284-201ENST00000578924 81 ntBASIC3.33□□□□□ -1.88
HLA-DMBP28068 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC3.33□□□□□ -1.88
HLA-DMBP28068 FAM106CP-201ENST00000582212 507 ntBASIC3.33□□□□□ -1.88
HLA-DMBP28068 MIR6891-201ENST00000618788 93 ntBASIC3.33□□□□□ -1.88
HLA-DMBP28068 AC103858.2-201ENST00000621471 543 ntBASIC3.33□□□□□ -1.88
HLA-DMBP28068 AC105105.5-201ENST00000622635 1294 ntBASIC3.33□□□□□ -1.88
HLA-DMBP28068 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
HLA-DMBP28068 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
HLA-DMBP28068 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
HLA-DMBP28068 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
HLA-DMBP28068 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HLA-DMBP28068 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC3.33□□□□□ -1.88
HLA-DMBP28068 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
HLA-DMBP28068 AL132640.2-201ENST00000559968 1698 ntBASIC3.33□□□□□ -1.88
HLA-DMBP28068 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC3.33□□□□□ -1.88
HLA-DMBP28068 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
HLA-DMBP28068 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
HLA-DMBP28068 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HLA-DMBP28068 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
HLA-DMBP28068 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
HLA-DMBP28068 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC3.32□□□□□ -1.88
HLA-DMBP28068 AC016588.2-201ENST00000632484 3021 ntBASIC3.32□□□□□ -1.88
HLA-DMBP28068 IGKV7-3-201ENST00000357453 298 ntBASIC3.32□□□□□ -1.88
HLA-DMBP28068 RNU6ATAC5P-201ENST00000388104 126 ntBASIC3.32□□□□□ -1.88
HLA-DMBP28068 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC3.32□□□□□ -1.88
HLA-DMBP28068 RPL31-204ENST00000409038 817 ntTSL 2 BASIC3.32□□□□□ -1.88
HLA-DMBP28068 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HLA-DMBP28068 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC3.32□□□□□ -1.88
HLA-DMBP28068 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC3.32□□□□□ -1.88
HLA-DMBP28068 RAB9AP4-201ENST00000415230 609 ntBASIC3.32□□□□□ -1.88
HLA-DMBP28068 UQCRBP1-201ENST00000421129 336 ntBASIC3.32□□□□□ -1.88
HLA-DMBP28068 AC099336.2-201ENST00000422457 254 ntBASIC3.32□□□□□ -1.88
HLA-DMBP28068 RPL7AP25-201ENST00000423357 805 ntBASIC3.32□□□□□ -1.88
HLA-DMBP28068 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.32□□□□□ -1.88
HLA-DMBP28068 AL451050.1-201ENST00000450126 415 ntBASIC3.32□□□□□ -1.88
HLA-DMBP28068 VN1R32P-201ENST00000452234 905 ntBASIC3.32□□□□□ -1.88
HLA-DMBP28068 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC3.32□□□□□ -1.88
HLA-DMBP28068 AC099560.2-201ENST00000457554 255 ntBASIC3.32□□□□□ -1.88
HLA-DMBP28068 SEPT14P1-201ENST00000458703 648 ntBASIC3.32□□□□□ -1.88
HLA-DMBP28068 RNU6ATAC28P-201ENST00000459249 118 ntBASIC3.32□□□□□ -1.88
HLA-DMBP28068 RPL35AP15-201ENST00000468042 339 ntBASIC3.32□□□□□ -1.88
HLA-DMBP28068 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC3.32□□□□□ -1.88
HLA-DMBP28068 F11-205ENST00000492972 1204 ntTSL 2 BASIC3.32□□□□□ -1.88
HLA-DMBP28068 AC146944.2-203ENST00000502493 354 ntBASIC3.32□□□□□ -1.88
HLA-DMBP28068 AC139495.1-202ENST00000513164 354 ntBASIC3.32□□□□□ -1.88
HLA-DMBP28068 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC3.32□□□□□ -1.88
HLA-DMBP28068 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC3.32□□□□□ -1.88
HLA-DMBP28068 AC009643.1-201ENST00000532030 391 ntBASIC3.32□□□□□ -1.88
HLA-DMBP28068 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HLA-DMBP28068 ASB8-204ENST00000536071 568 ntTSL 4 BASIC3.32□□□□□ -1.88
HLA-DMBP28068 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC3.32□□□□□ -1.88
HLA-DMBP28068 RPL23AP97-201ENST00000568955 471 ntBASIC3.32□□□□□ -1.88
HLA-DMBP28068 MIR4715-201ENST00000584117 79 ntBASIC3.32□□□□□ -1.88
HLA-DMBP28068 AL139395.1-201ENST00000603662 160 ntBASIC3.32□□□□□ -1.88
HLA-DMBP28068 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HLA-DMBP28068 AL133243.1-201ENST00000614487 366 ntBASIC3.32□□□□□ -1.88
HLA-DMBP28068 MIR4727-201ENST00000622232 55 ntBASIC3.32□□□□□ -1.88
HLA-DMBP28068 AC002044.3-201ENST00000623314 541 ntBASIC3.32□□□□□ -1.88
HLA-DMBP28068 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC3.32□□□□□ -1.88
HLA-DMBP28068 MIR6715B-201ENST00000637172 77 ntBASIC3.32□□□□□ -1.88
HLA-DMBP28068 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HLA-DMBP28068 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
HLA-DMBP28068 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HLA-DMBP28068 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HLA-DMBP28068 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HLA-DMBP28068 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HLA-DMBP28068 CARF-208ENST00000428585 2513 ntTSL 2 BASIC3.32□□□□□ -1.88
HLA-DMBP28068 MFSD8-216ENST00000641147 4009 ntBASIC3.32□□□□□ -1.88
HLA-DMBP28068 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC3.31□□□□□ -1.88
HLA-DMBP28068 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.31□□□□□ -1.88
HLA-DMBP28068 AC134882.1-201ENST00000603738 1676 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
HLA-DMBP28068 AL137100.1-201ENST00000556703 1620 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HLA-DMBP28068 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC3.31□□□□□ -1.88
HLA-DMBP28068 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HLA-DMBP28068 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
HLA-DMBP28068 MIR365B-201ENST00000362317 111 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 124.3 ms