Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC5.27□□□□□ -1.57
BDNFP23560 LY96-202ENST00000518893 430 ntTSL 3 BASIC5.27□□□□□ -1.57
BDNFP23560 AC100784.1-201ENST00000522790 310 ntBASIC5.27□□□□□ -1.57
BDNFP23560 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC5.27□□□□□ -1.57
BDNFP23560 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC5.27□□□□□ -1.57
BDNFP23560 EDDM3DP-201ENST00000554692 434 ntBASIC5.27□□□□□ -1.57
BDNFP23560 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.27□□□□□ -1.57
BDNFP23560 AC124068.1-201ENST00000563131 678 ntBASIC5.27□□□□□ -1.57
BDNFP23560 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC5.27□□□□□ -1.57
BDNFP23560 AC009117.1-201ENST00000563948 554 ntBASIC5.27□□□□□ -1.57
BDNFP23560 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC5.27□□□□□ -1.57
BDNFP23560 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC5.27□□□□□ -1.57
BDNFP23560 AL031320.1-201ENST00000604177 357 ntBASIC5.27□□□□□ -1.57
BDNFP23560 AL359535.1-201ENST00000612100 1087 ntBASIC5.27□□□□□ -1.57
BDNFP23560 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC5.27□□□□□ -1.57
BDNFP23560 AC073592.7-201ENST00000623659 507 ntBASIC5.27□□□□□ -1.57
BDNFP23560 AL049536.1-201ENST00000625043 744 ntBASIC5.27□□□□□ -1.57
BDNFP23560 FRG1EP-201ENST00000634469 770 ntBASIC5.27□□□□□ -1.57
BDNFP23560 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC5.27□□□□□ -1.57
BDNFP23560 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
BDNFP23560 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
BDNFP23560 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
BDNFP23560 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
BDNFP23560 AC092376.2-201ENST00000622621 4116 ntBASIC5.27□□□□□ -1.57
BDNFP23560 BBX-203ENST00000402543 3980 ntTSL 5 BASIC5.27□□□□□ -1.57
BDNFP23560 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
BDNFP23560 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.27□□□□□ -1.57
BDNFP23560 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
BDNFP23560 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
BDNFP23560 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
BDNFP23560 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC5.26□□□□□ -1.57
BDNFP23560 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
BDNFP23560 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.26□□□□□ -1.57
BDNFP23560 OR10J6P-201ENST00000289731 930 ntBASIC5.26□□□□□ -1.57
BDNFP23560 GNAS-202ENST00000306090 477 ntTSL 5 BASIC5.26□□□□□ -1.57
BDNFP23560 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
BDNFP23560 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC5.26□□□□□ -1.57
BDNFP23560 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC5.26□□□□□ -1.57
BDNFP23560 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC5.26□□□□□ -1.57
BDNFP23560 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.26□□□□□ -1.57
BDNFP23560 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC5.26□□□□□ -1.57
BDNFP23560 RPS12P5-201ENST00000423449 371 ntBASIC5.26□□□□□ -1.57
BDNFP23560 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
BDNFP23560 AP001324.1-201ENST00000428553 399 ntBASIC5.26□□□□□ -1.57
BDNFP23560 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC5.26□□□□□ -1.57
BDNFP23560 RPL21P110-201ENST00000433345 446 ntBASIC5.26□□□□□ -1.57
BDNFP23560 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC5.26□□□□□ -1.57
BDNFP23560 AL450023.3-201ENST00000440592 271 ntBASIC5.26□□□□□ -1.57
BDNFP23560 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
BDNFP23560 PRPF38AP1-201ENST00000451976 933 ntBASIC5.26□□□□□ -1.57
BDNFP23560 AC091685.2-201ENST00000454924 864 ntBASIC5.26□□□□□ -1.57
BDNFP23560 BX248409.1-201ENST00000455497 255 ntBASIC5.26□□□□□ -1.57
BDNFP23560 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC5.26□□□□□ -1.57
BDNFP23560 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC5.26□□□□□ -1.57
BDNFP23560 AC126121.1-201ENST00000482313 553 ntBASIC5.26□□□□□ -1.57
BDNFP23560 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC5.26□□□□□ -1.57
BDNFP23560 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC5.26□□□□□ -1.57
BDNFP23560 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC5.26□□□□□ -1.57
BDNFP23560 AP003049.1-201ENST00000529418 457 ntBASIC5.26□□□□□ -1.57
BDNFP23560 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.26□□□□□ -1.57
BDNFP23560 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC5.26□□□□□ -1.57
BDNFP23560 MIR4660-201ENST00000583549 74 ntBASIC5.26□□□□□ -1.57
BDNFP23560 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC5.26□□□□□ -1.57
BDNFP23560 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC5.26□□□□□ -1.57
BDNFP23560 AC022079.2-201ENST00000619739 566 ntBASIC5.26□□□□□ -1.57
BDNFP23560 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC5.26□□□□□ -1.57
BDNFP23560 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
BDNFP23560 ADAM5-202ENST00000399789 1942 ntBASIC5.26□□□□□ -1.57
BDNFP23560 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
BDNFP23560 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5.26□□□□□ -1.57
BDNFP23560 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.26□□□□□ -1.57
BDNFP23560 AC099654.2-201ENST00000433031 1980 ntBASIC5.25□□□□□ -1.57
BDNFP23560 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC5.25□□□□□ -1.57
BDNFP23560 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC5.25□□□□□ -1.57
BDNFP23560 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC5.25□□□□□ -1.57
BDNFP23560 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC5.25□□□□□ -1.57
BDNFP23560 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
BDNFP23560 MTCO1P4-201ENST00000520516 1409 ntBASIC5.25□□□□□ -1.57
BDNFP23560 AC073136.1-201ENST00000449426 2884 ntBASIC5.25□□□□□ -1.57
BDNFP23560 SNORA70E-201ENST00000384492 135 ntBASIC5.25□□□□□ -1.57
BDNFP23560 MIR153-1-201ENST00000384914 90 ntBASIC5.25□□□□□ -1.57
BDNFP23560 LRRC37BP1-201ENST00000398851 714 ntBASIC5.25□□□□□ -1.57
BDNFP23560 ATP5F1P6-201ENST00000402768 767 ntBASIC5.25□□□□□ -1.57
BDNFP23560 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC5.25□□□□□ -1.57
BDNFP23560 PCNPP4-201ENST00000414817 517 ntBASIC5.25□□□□□ -1.57
BDNFP23560 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC5.25□□□□□ -1.57
BDNFP23560 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
BDNFP23560 AL360081.1-201ENST00000428299 555 ntBASIC5.25□□□□□ -1.57
BDNFP23560 AL049745.1-201ENST00000433953 286 ntBASIC5.25□□□□□ -1.57
BDNFP23560 AC008072.1-201ENST00000434254 824 ntBASIC5.25□□□□□ -1.57
BDNFP23560 RPL7AP61-201ENST00000443410 636 ntBASIC5.25□□□□□ -1.57
BDNFP23560 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
BDNFP23560 OR52J1P-201ENST00000450596 932 ntBASIC5.25□□□□□ -1.57
BDNFP23560 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC5.25□□□□□ -1.57
BDNFP23560 AL691482.1-201ENST00000453255 87 ntBASIC5.25□□□□□ -1.57
BDNFP23560 SNORD108-201ENST00000459332 71 ntBASIC5.25□□□□□ -1.57
BDNFP23560 AC146507.1-201ENST00000468335 354 ntBASIC5.25□□□□□ -1.57
BDNFP23560 AC092324.1-201ENST00000468671 324 ntBASIC5.25□□□□□ -1.57
BDNFP23560 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC5.25□□□□□ -1.57
BDNFP23560 RNA5SP230-201ENST00000517039 122 ntBASIC5.25□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms