Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC3.88□□□□□ -1.79
USF1P22415 FGF7P3-201ENST00000454645 303 ntBASIC3.88□□□□□ -1.79
USF1P22415 AC133473.1-201ENST00000455173 299 ntBASIC3.88□□□□□ -1.79
USF1P22415 EIF4A2P4-201ENST00000458691 1196 ntBASIC3.88□□□□□ -1.79
USF1P22415 AC090142.1-201ENST00000465776 462 ntBASIC3.88□□□□□ -1.79
USF1P22415 RPL36AP41-201ENST00000493820 306 ntBASIC3.88□□□□□ -1.79
USF1P22415 AC025164.1-201ENST00000496249 478 ntBASIC3.88□□□□□ -1.79
USF1P22415 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC3.88□□□□□ -1.79
USF1P22415 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC3.88□□□□□ -1.79
USF1P22415 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC3.88□□□□□ -1.79
USF1P22415 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC3.88□□□□□ -1.79
USF1P22415 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC3.88□□□□□ -1.79
USF1P22415 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC3.88□□□□□ -1.79
USF1P22415 AC087477.6-201ENST00000559595 843 ntBASIC3.88□□□□□ -1.79
USF1P22415 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC3.88□□□□□ -1.79
USF1P22415 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC3.88□□□□□ -1.79
USF1P22415 MIR3939-201ENST00000582614 106 ntBASIC3.88□□□□□ -1.79
USF1P22415 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC3.88□□□□□ -1.79
USF1P22415 AC103792.1-201ENST00000603591 919 ntBASIC3.88□□□□□ -1.79
USF1P22415 AC023043.4-201ENST00000612081 449 ntBASIC3.88□□□□□ -1.79
USF1P22415 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC3.88□□□□□ -1.79
USF1P22415 AL158196.1-201ENST00000616786 434 ntBASIC3.88□□□□□ -1.79
USF1P22415 AC011944.2-201ENST00000624440 683 ntBASIC3.88□□□□□ -1.79
USF1P22415 AC068724.3-201ENST00000625906 87 ntBASIC3.88□□□□□ -1.79
USF1P22415 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.88□□□□□ -1.79
USF1P22415 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC3.88□□□□□ -1.79
USF1P22415 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
USF1P22415 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
USF1P22415 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.88□□□□□ -1.79
USF1P22415 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
USF1P22415 AL445487.1-201ENST00000415694 1580 ntBASIC3.88□□□□□ -1.79
USF1P22415 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC3.88□□□□□ -1.79
USF1P22415 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
USF1P22415 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC3.88□□□□□ -1.79
USF1P22415 AL445437.1-201ENST00000623157 3087 ntBASIC3.88□□□□□ -1.79
USF1P22415 AC009951.1-201ENST00000623674 2614 ntBASIC3.88□□□□□ -1.79
USF1P22415 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
USF1P22415 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC3.87□□□□□ -1.79
USF1P22415 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC3.87□□□□□ -1.79
USF1P22415 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC3.87□□□□□ -1.79
USF1P22415 AC090017.1-201ENST00000548612 1779 ntBASIC3.87□□□□□ -1.79
USF1P22415 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC3.87□□□□□ -1.79
USF1P22415 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
USF1P22415 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
USF1P22415 RNU4-23P-201ENST00000362839 140 ntBASIC3.87□□□□□ -1.79
USF1P22415 OR6C69P-201ENST00000394268 893 ntBASIC3.87□□□□□ -1.79
USF1P22415 OR1F12-201ENST00000402365 945 ntBASIC3.87□□□□□ -1.79
USF1P22415 RPL6P29-201ENST00000414863 865 ntBASIC3.87□□□□□ -1.79
USF1P22415 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC3.87□□□□□ -1.79
USF1P22415 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC3.87□□□□□ -1.79
USF1P22415 AL356387.2-201ENST00000422272 243 ntBASIC3.87□□□□□ -1.79
USF1P22415 RPS12P5-201ENST00000423449 371 ntBASIC3.87□□□□□ -1.79
USF1P22415 GAS5-208ENST00000425771 242 ntTSL 3 BASIC3.87□□□□□ -1.79
USF1P22415 Z85994.2-201ENST00000434327 452 ntBASIC3.87□□□□□ -1.79
USF1P22415 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC3.87□□□□□ -1.79
USF1P22415 ELOCP10-201ENST00000440624 327 ntBASIC3.87□□□□□ -1.79
USF1P22415 AC104651.2-201ENST00000447549 528 ntBASIC3.87□□□□□ -1.79
USF1P22415 RPL7AP52-201ENST00000458096 790 ntBASIC3.87□□□□□ -1.79
USF1P22415 RPL5P30-201ENST00000465511 891 ntBASIC3.87□□□□□ -1.79
USF1P22415 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC3.87□□□□□ -1.79
USF1P22415 PGBD4P4-201ENST00000509673 613 ntBASIC3.87□□□□□ -1.79
USF1P22415 NDUFB4P12-201ENST00000513465 390 ntBASIC3.87□□□□□ -1.79
USF1P22415 RN7SKP21-201ENST00000516503 220 ntBASIC3.87□□□□□ -1.79
USF1P22415 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC3.87□□□□□ -1.79
USF1P22415 EIF4A2P3-201ENST00000525903 1055 ntBASIC3.87□□□□□ -1.79
USF1P22415 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC3.87□□□□□ -1.79
USF1P22415 EIF1AXP2-201ENST00000555940 413 ntBASIC3.87□□□□□ -1.79
USF1P22415 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
USF1P22415 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC3.87□□□□□ -1.79
USF1P22415 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC3.87□□□□□ -1.79
USF1P22415 AC123786.2-201ENST00000603459 275 ntBASIC3.87□□□□□ -1.79
USF1P22415 ELOCP34-201ENST00000604436 327 ntBASIC3.87□□□□□ -1.79
USF1P22415 HMGB1P51-201ENST00000605166 638 ntBASIC3.87□□□□□ -1.79
USF1P22415 AC090948.1-201ENST00000607464 549 ntBASIC3.87□□□□□ -1.79
USF1P22415 AC012409.3-201ENST00000611343 981 ntBASIC3.87□□□□□ -1.79
USF1P22415 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
USF1P22415 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
USF1P22415 AC074029.4-201ENST00000624796 1859 ntBASIC3.87□□□□□ -1.79
USF1P22415 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
USF1P22415 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC3.87□□□□□ -1.79
USF1P22415 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
USF1P22415 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
USF1P22415 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
USF1P22415 AC090971.4-201ENST00000560291 1800 ntBASIC3.86□□□□□ -1.79
USF1P22415 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
USF1P22415 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
USF1P22415 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
USF1P22415 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
USF1P22415 ARHGAP42P3-201ENST00000443989 2508 ntBASIC3.86□□□□□ -1.79
USF1P22415 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
USF1P22415 DLD-204ENST00000437604 1859 ntTSL 2 BASIC3.86□□□□□ -1.79
USF1P22415 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
USF1P22415 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
USF1P22415 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
USF1P22415 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
USF1P22415 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.86□□□□□ -1.79
USF1P22415 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
USF1P22415 RNA5SP479-201ENST00000364858 117 ntBASIC3.86□□□□□ -1.79
USF1P22415 AL590762.2-201ENST00000395798 571 ntBASIC3.86□□□□□ -1.79
USF1P22415 SDHCP2-201ENST00000398565 501 ntBASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms