Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 HMGB2P1-201ENST00000591146 634 ntBASIC7.47□□□□□ -1.21
COL9A1P20849 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC7.47□□□□□ -1.21
COL9A1P20849 AL031176.1-201ENST00000604554 466 ntBASIC7.47□□□□□ -1.21
COL9A1P20849 SNORD58B-201ENST00000607313 66 ntBASIC7.47□□□□□ -1.21
COL9A1P20849 AP001486.3-201ENST00000615334 372 ntBASIC7.47□□□□□ -1.21
COL9A1P20849 AC211433.3-201ENST00000623770 375 ntBASIC7.47□□□□□ -1.21
COL9A1P20849 CDRT1-208ENST00000630868 794 ntBASIC7.47□□□□□ -1.21
COL9A1P20849 CRNDE-214ENST00000637011 865 ntTSL 5 BASIC7.47□□□□□ -1.21
COL9A1P20849 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC7.47□□□□□ -1.21
COL9A1P20849 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL9A1P20849 RGS6-205ENST00000406236 1476 ntAPPRIS ALT1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL9A1P20849 GRB10-207ENST00000402578 4760 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
COL9A1P20849 CREM-208ENST00000361599 2170 ntTSL 5 BASIC7.47□□□□□ -1.21
COL9A1P20849 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC7.47□□□□□ -1.21
COL9A1P20849 OAT-201ENST00000368845 2048 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL9A1P20849 PPFIBP1-207ENST00000537927 5719 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
COL9A1P20849 DCP1B-205ENST00000540622 1547 ntTSL 5 BASIC7.47□□□□□ -1.21
COL9A1P20849 SLC37A3-202ENST00000340308 2955 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
COL9A1P20849 AC108676.1-201ENST00000455557 2969 ntTSL 2 BASIC7.47□□□□□ -1.21
COL9A1P20849 CAND1-208ENST00000545606 11251 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL9A1P20849 SLC16A4-202ENST00000369781 2082 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
COL9A1P20849 AC139426.3-201ENST00000605648 2059 ntBASIC7.47□□□□□ -1.21
COL9A1P20849 PCM1-212ENST00000519253 6443 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
COL9A1P20849 SLC39A12-203ENST00000377374 2639 ntAPPRIS P3 TSL 2 BASIC7.47□□□□□ -1.21
COL9A1P20849 ZNF317-201ENST00000247956 4073 ntAPPRIS P3 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL9A1P20849 MFSD6-201ENST00000281416 4608 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL9A1P20849 AC011632.1-202ENST00000518128 2810 ntTSL 2 BASIC7.46□□□□□ -1.21
COL9A1P20849 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC7.46□□□□□ -1.21
COL9A1P20849 AMPD3-204ENST00000444303 3994 ntTSL 2 BASIC7.46□□□□□ -1.21
COL9A1P20849 EP400-204ENST00000389561 12317 ntAPPRIS P1 TSL 5 BASIC7.46□□□□□ -1.21
COL9A1P20849 SCARB2-211ENST00000638603 4284 ntTSL 5 BASIC7.46□□□□□ -1.21
COL9A1P20849 ZNF462-204ENST00000441147 4691 ntTSL 1 (best) BASIC7.46□□□□□ -1.21
COL9A1P20849 OSER1-202ENST00000372970 1616 ntAPPRIS P1 TSL 3 BASIC7.46□□□□□ -1.21
COL9A1P20849 TCF12-206ENST00000543579 1809 ntTSL 1 (best) BASIC7.46□□□□□ -1.21
COL9A1P20849 NLGN4X-204ENST00000381095 5870 ntAPPRIS P2 TSL 1 (best) BASIC7.46□□□□□ -1.22
COL9A1P20849 ZSCAN31-203ENST00000414429 3551 ntAPPRIS P1 TSL 2 BASIC7.46□□□□□ -1.22
COL9A1P20849 C15orf41-202ENST00000437989 2240 ntAPPRIS P3 TSL 1 (best) BASIC7.46□□□□□ -1.22
COL9A1P20849 PITRM1-AS1-201ENST00000430356 3998 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
COL9A1P20849 MIR323A-201ENST00000362199 86 ntBASIC7.46□□□□□ -1.22
COL9A1P20849 RNA5SP382-201ENST00000363355 112 ntBASIC7.46□□□□□ -1.22
COL9A1P20849 Y_RNA.376-201ENST00000365638 108 ntBASIC7.46□□□□□ -1.22
COL9A1P20849 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
COL9A1P20849 RNU6-886P-201ENST00000384319 105 ntBASIC7.46□□□□□ -1.22
COL9A1P20849 Y_RNA.485-201ENST00000384395 102 ntBASIC7.46□□□□□ -1.22
COL9A1P20849 Y_RNA.518-201ENST00000384552 113 ntBASIC7.46□□□□□ -1.22
COL9A1P20849 MIR1178-201ENST00000408396 91 ntBASIC7.46□□□□□ -1.22
COL9A1P20849 Y_RNA.594-201ENST00000410373 140 ntBASIC7.46□□□□□ -1.22
COL9A1P20849 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC7.46□□□□□ -1.22
COL9A1P20849 AP000431.1-201ENST00000424219 469 ntTSL 3 BASIC7.46□□□□□ -1.22
COL9A1P20849 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC7.46□□□□□ -1.22
COL9A1P20849 TMSB4XP3-201ENST00000445144 114 ntBASIC7.46□□□□□ -1.22
COL9A1P20849 SS18L2P1-201ENST00000445923 213 ntBASIC7.46□□□□□ -1.22
COL9A1P20849 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
COL9A1P20849 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC7.46□□□□□ -1.22
COL9A1P20849 CYCSP44-201ENST00000448560 313 ntBASIC7.46□□□□□ -1.22
COL9A1P20849 ZNF385D-AS2-202ENST00000448980 370 ntTSL 3 BASIC7.46□□□□□ -1.22
COL9A1P20849 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC7.46□□□□□ -1.22
COL9A1P20849 AC103987.1-201ENST00000473394 348 ntBASIC7.46□□□□□ -1.22
COL9A1P20849 AC093267.1-201ENST00000489176 961 ntBASIC7.46□□□□□ -1.22
COL9A1P20849 AC009901.1-201ENST00000506703 541 ntBASIC7.46□□□□□ -1.22
COL9A1P20849 Y_RNA.670-201ENST00000516255 105 ntBASIC7.46□□□□□ -1.22
COL9A1P20849 RNU6-307P-201ENST00000516743 106 ntBASIC7.46□□□□□ -1.22
COL9A1P20849 RNU1-54P-201ENST00000517181 120 ntBASIC7.46□□□□□ -1.22
COL9A1P20849 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC7.46□□□□□ -1.22
COL9A1P20849 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC7.46□□□□□ -1.22
COL9A1P20849 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC7.46□□□□□ -1.22
COL9A1P20849 OR11H5P-201ENST00000554039 926 ntBASIC7.46□□□□□ -1.22
COL9A1P20849 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC7.46□□□□□ -1.22
COL9A1P20849 AC017100.2-201ENST00000584628 355 ntBASIC7.46□□□□□ -1.22
COL9A1P20849 MRO-208ENST00000588444 866 ntTSL 3 BASIC7.46□□□□□ -1.22
COL9A1P20849 ADGRF5P1-202ENST00000590130 980 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
COL9A1P20849 OR7E18P-201ENST00000592589 702 ntBASIC7.46□□□□□ -1.22
COL9A1P20849 AC010201.1-201ENST00000605051 540 ntBASIC7.46□□□□□ -1.22
COL9A1P20849 OAZ3-211ENST00000639906 708 ntAPPRIS P2 TSL 5 BASIC7.46□□□□□ -1.22
COL9A1P20849 DLG2-218ENST00000524982 2872 ntTSL 2 BASIC7.46□□□□□ -1.22
COL9A1P20849 BTN3A2-205ENST00000508906 3733 ntAPPRIS ALT2 TSL 2 BASIC7.46□□□□□ -1.22
COL9A1P20849 AKAP3-201ENST00000228850 3339 ntAPPRIS P1 TSL 5 BASIC7.46□□□□□ -1.22
COL9A1P20849 LINC01105-203ENST00000431188 3329 ntTSL 5 BASIC7.46□□□□□ -1.22
COL9A1P20849 INTS7-204ENST00000440600 3136 ntTSL 2 BASIC7.46□□□□□ -1.22
COL9A1P20849 CDY1-201ENST00000306609 2321 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
COL9A1P20849 CDY1B-201ENST00000306882 2321 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
COL9A1P20849 PAX6-270ENST00000640368 6975 ntAPPRIS P4 TSL 5 BASIC7.46□□□□□ -1.22
COL9A1P20849 WAC-209ENST00000428935 1320 ntTSL 2 BASIC7.46□□□□□ -1.22
COL9A1P20849 AC235565.1-201ENST00000456962 1325 ntBASIC7.46□□□□□ -1.22
COL9A1P20849 MAP2-207ENST00000447185 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC7.46□□□□□ -1.22
COL9A1P20849 BBX-207ENST00000416476 2178 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
COL9A1P20849 HTR2C-202ENST00000371950 4652 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
COL9A1P20849 ANKRD30A-205ENST00000611781 4474 ntAPPRIS ALT2 TSL 5 BASIC7.46□□□□□ -1.22
COL9A1P20849 LINC01359-204ENST00000447748 2804 ntTSL 2 BASIC7.46□□□□□ -1.22
COL9A1P20849 COA1-203ENST00000395879 2448 ntAPPRIS P3 TSL 1 (best) BASIC7.46□□□□□ -1.22
COL9A1P20849 IQCA1-204ENST00000409907 3281 ntAPPRIS P3 TSL 1 (best) BASIC7.46□□□□□ -1.22
COL9A1P20849 AC116366.1-201ENST00000443093 3730 ntTSL 5 BASIC7.45□□□□□ -1.22
COL9A1P20849 PPP2R5C-218ENST00000556260 2013 ntTSL 3 BASIC7.45□□□□□ -1.22
COL9A1P20849 L3MBTL4-203ENST00000400105 3546 ntAPPRIS P1 TSL 2 BASIC7.45□□□□□ -1.22
COL9A1P20849 ZNF649-201ENST00000354957 3197 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL9A1P20849 AL022068.1-201ENST00000636202 1875 ntTSL 5 BASIC7.45□□□□□ -1.22
COL9A1P20849 ZFHX3-201ENST00000268489 16064 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL9A1P20849 CHD8-213ENST00000557364 8137 ntAPPRIS ALT2 TSL 5 BASIC7.45□□□□□ -1.22
COL9A1P20849 FAM217B-202ENST00000360816 5036 ntAPPRIS P2 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL9A1P20849 LINC01358-207ENST00000634502 2575 ntTSL 5 BASIC7.45□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms