Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 SETP12-201ENST00000514068 805 ntBASIC4.18□□□□□ -1.74
SDC1P18827 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
SDC1P18827 AP000827.1-201ENST00000527814 258 ntBASIC4.18□□□□□ -1.74
SDC1P18827 CASP1-216ENST00000534497 825 ntTSL 5 BASIC4.18□□□□□ -1.74
SDC1P18827 AC027176.2-201ENST00000559166 746 ntBASIC4.18□□□□□ -1.74
SDC1P18827 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
SDC1P18827 MIR4270-201ENST00000581799 70 ntBASIC4.18□□□□□ -1.74
SDC1P18827 AP001160.4-201ENST00000596971 382 ntBASIC4.18□□□□□ -1.74
SDC1P18827 AC009237.17-201ENST00000618111 748 ntBASIC4.18□□□□□ -1.74
SDC1P18827 AC019278.1-201ENST00000623516 479 ntBASIC4.18□□□□□ -1.74
SDC1P18827 AC020923.1-201ENST00000624021 917 ntBASIC4.18□□□□□ -1.74
SDC1P18827 AL355480.1-201ENST00000629041 99 ntBASIC4.18□□□□□ -1.74
SDC1P18827 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.18□□□□□ -1.74
SDC1P18827 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
SDC1P18827 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC4.18□□□□□ -1.74
SDC1P18827 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC4.18□□□□□ -1.74
SDC1P18827 AC107027.3-201ENST00000565095 3473 ntBASIC4.18□□□□□ -1.74
SDC1P18827 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
SDC1P18827 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
SDC1P18827 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
SDC1P18827 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC4.17□□□□□ -1.74
SDC1P18827 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.17□□□□□ -1.74
SDC1P18827 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
SDC1P18827 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
SDC1P18827 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.17□□□□□ -1.74
SDC1P18827 OR52B1P-201ENST00000316506 909 ntBASIC4.17□□□□□ -1.74
SDC1P18827 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
SDC1P18827 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
SDC1P18827 RNU6-532P-201ENST00000384318 107 ntBASIC4.17□□□□□ -1.74
SDC1P18827 MIR323B-201ENST00000385269 82 ntBASIC4.17□□□□□ -1.74
SDC1P18827 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
SDC1P18827 SNORA68.2-201ENST00000391263 128 ntBASIC4.17□□□□□ -1.74
SDC1P18827 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC4.17□□□□□ -1.74
SDC1P18827 AL356057.1-202ENST00000402263 756 ntBASIC4.17□□□□□ -1.74
SDC1P18827 RN7SKP222-201ENST00000410651 315 ntBASIC4.17□□□□□ -1.74
SDC1P18827 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC4.17□□□□□ -1.74
SDC1P18827 RPS23P10-201ENST00000416185 486 ntBASIC4.17□□□□□ -1.74
SDC1P18827 AL139095.3-201ENST00000419672 1203 ntBASIC4.17□□□□□ -1.74
SDC1P18827 UQCRBP1-201ENST00000421129 336 ntBASIC4.17□□□□□ -1.74
SDC1P18827 MTATP6P11-201ENST00000428071 670 ntBASIC4.17□□□□□ -1.74
SDC1P18827 HLA-N-201ENST00000437516 135 ntBASIC4.17□□□□□ -1.74
SDC1P18827 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC4.17□□□□□ -1.74
SDC1P18827 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC4.17□□□□□ -1.74
SDC1P18827 RPL7P33-201ENST00000444159 742 ntBASIC4.17□□□□□ -1.74
SDC1P18827 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.17□□□□□ -1.74
SDC1P18827 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC4.17□□□□□ -1.74
SDC1P18827 AL162591.2-201ENST00000449634 317 ntBASIC4.17□□□□□ -1.74
SDC1P18827 AC053481.1-201ENST00000467217 306 ntBASIC4.17□□□□□ -1.74
SDC1P18827 RPL32P9-201ENST00000487963 407 ntBASIC4.17□□□□□ -1.74
SDC1P18827 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC4.17□□□□□ -1.74
SDC1P18827 ATP1B1P1-201ENST00000509767 915 ntBASIC4.17□□□□□ -1.74
SDC1P18827 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.17□□□□□ -1.74
SDC1P18827 PHBP17-201ENST00000528576 541 ntBASIC4.17□□□□□ -1.74
SDC1P18827 OR5D15P-201ENST00000531671 942 ntBASIC4.17□□□□□ -1.74
SDC1P18827 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.17□□□□□ -1.74
SDC1P18827 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC4.17□□□□□ -1.74
SDC1P18827 AL352979.3-201ENST00000553515 247 ntBASIC4.17□□□□□ -1.74
SDC1P18827 LINC00557-201ENST00000563184 1279 ntBASIC4.17□□□□□ -1.74
SDC1P18827 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC4.17□□□□□ -1.74
SDC1P18827 AC069061.3-201ENST00000582254 823 ntBASIC4.17□□□□□ -1.74
SDC1P18827 AC005242.1-201ENST00000585658 438 ntBASIC4.17□□□□□ -1.74
SDC1P18827 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.17□□□□□ -1.74
SDC1P18827 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.17□□□□□ -1.74
SDC1P18827 AC008782.1-201ENST00000603386 430 ntBASIC4.17□□□□□ -1.74
SDC1P18827 AC012557.1-201ENST00000607115 611 ntBASIC4.17□□□□□ -1.74
SDC1P18827 AL031666.3-201ENST00000609320 1006 ntBASIC4.17□□□□□ -1.74
SDC1P18827 AC145207.9-201ENST00000623802 325 ntBASIC4.17□□□□□ -1.74
SDC1P18827 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC4.17□□□□□ -1.74
SDC1P18827 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC4.17□□□□□ -1.74
SDC1P18827 A2MP1-204ENST00000566278 4130 ntBASIC4.17□□□□□ -1.74
SDC1P18827 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.17□□□□□ -1.74
SDC1P18827 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
SDC1P18827 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.17□□□□□ -1.74
SDC1P18827 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.17□□□□□ -1.74
SDC1P18827 LINC01109-201ENST00000603837 3081 ntBASIC4.17□□□□□ -1.74
SDC1P18827 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
SDC1P18827 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.17□□□□□ -1.74
SDC1P18827 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
SDC1P18827 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
SDC1P18827 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.16□□□□□ -1.74
SDC1P18827 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
SDC1P18827 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.16□□□□□ -1.74
SDC1P18827 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC4.16□□□□□ -1.74
SDC1P18827 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
SDC1P18827 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
SDC1P18827 MIR3065-201ENST00000390137 79 ntBASIC4.16□□□□□ -1.74
SDC1P18827 SNORD66.1-201ENST00000391230 76 ntBASIC4.16□□□□□ -1.74
SDC1P18827 AC097374.1-203ENST00000400783 485 ntBASIC4.16□□□□□ -1.74
SDC1P18827 AL353692.2-201ENST00000407054 335 ntBASIC4.16□□□□□ -1.74
SDC1P18827 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.16□□□□□ -1.74
SDC1P18827 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.16□□□□□ -1.74
SDC1P18827 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.16□□□□□ -1.74
SDC1P18827 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.16□□□□□ -1.74
SDC1P18827 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC4.16□□□□□ -1.74
SDC1P18827 MTCYBP12-201ENST00000440559 1134 ntBASIC4.16□□□□□ -1.74
SDC1P18827 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC4.16□□□□□ -1.74
SDC1P18827 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC4.16□□□□□ -1.74
SDC1P18827 AC023512.1-201ENST00000444513 499 ntBASIC4.16□□□□□ -1.74
SDC1P18827 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC4.16□□□□□ -1.74
SDC1P18827 DHFRP3-201ENST00000455595 559 ntBASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms