Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
TRIM39Q9HCM9 U1.25-201ENST00000614085 162 ntBASIC5.78□□□□□ -1.48
TRIM39Q9HCM9 AC006338.2-201ENST00000616864 791 ntBASIC5.78□□□□□ -1.48
TRIM39Q9HCM9 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
TRIM39Q9HCM9 AC093775.1-201ENST00000624154 1868 ntBASIC5.78□□□□□ -1.48
TRIM39Q9HCM9 UBA3-213ENST00000631029 123 ntTSL 5 BASIC5.78□□□□□ -1.48
TRIM39Q9HCM9 OR11H2-202ENST00000641517 1085 ntBASIC5.78□□□□□ -1.48
TRIM39Q9HCM9 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
TRIM39Q9HCM9 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
TRIM39Q9HCM9 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
TRIM39Q9HCM9 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
TRIM39Q9HCM9 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
TRIM39Q9HCM9 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
TRIM39Q9HCM9 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.78□□□□□ -1.48
TRIM39Q9HCM9 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.78□□□□□ -1.48
TRIM39Q9HCM9 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
TRIM39Q9HCM9 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
TRIM39Q9HCM9 MTND4P4-201ENST00000439033 1366 ntBASIC5.78□□□□□ -1.48
TRIM39Q9HCM9 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
TRIM39Q9HCM9 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.77□□□□□ -1.48
TRIM39Q9HCM9 ATP5A1P4-201ENST00000556888 1605 ntBASIC5.77□□□□□ -1.48
TRIM39Q9HCM9 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 AL034546.1-201ENST00000623740 3693 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 AC091305.2-201ENST00000624049 1576 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 AC109446.4-201ENST00000623235 2755 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 AC020633.1-201ENST00000468439 2247 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 RPL21P132-201ENST00000331267 462 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 RNU4-21P-201ENST00000362802 126 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 RNU6-216P-201ENST00000363282 104 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 RNA5SP510-201ENST00000364697 99 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 GLS-204ENST00000409428 816 ntTSL 2 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 CENPIP1-201ENST00000425713 902 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 UBE2FP3-201ENST00000436366 524 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 AC092641.1-201ENST00000440229 772 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 CDC27P1-201ENST00000445384 715 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 NPM1P39-201ENST00000449818 867 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 RPL23AP15-201ENST00000450202 459 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 OR6C5P-201ENST00000452388 923 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 AC112206.1-201ENST00000468416 477 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 RPS17P15-201ENST00000475609 349 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 TRBV5-2-201ENST00000489095 273 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 AC108078.3-201ENST00000502633 489 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 SNORD46.2-201ENST00000516021 102 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 RGS5-218ENST00000526176 574 ntTSL 4 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 AC027243.2-201ENST00000602530 724 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 RNU6-88P-201ENST00000606801 100 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 AL391497.1-201ENST00000608671 547 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 AC092184.1-201ENST00000625042 715 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 LINC01739-205ENST00000641890 573 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 LINC02019-201ENST00000608605 2060 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 MTCO1P7-201ENST00000419523 1542 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 ATP8A2P3-201ENST00000426792 1536 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 AC005224.3-201ENST00000584683 2140 ntBASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
TRIM39Q9HCM9 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
TRIM39Q9HCM9 MTND5P29-201ENST00000458676 1807 ntBASIC5.76□□□□□ -1.49
TRIM39Q9HCM9 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
TRIM39Q9HCM9 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
TRIM39Q9HCM9 ALB-219ENST00000621085 1418 ntTSL 5 BASIC5.76□□□□□ -1.49
TRIM39Q9HCM9 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.76□□□□□ -1.49
TRIM39Q9HCM9 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.76□□□□□ -1.49
TRIM39Q9HCM9 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms