Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC28BQ9BUN5 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.39□□□□□ -1.71
CCDC28BQ9BUN5 AC084824.5-201ENST00000612009 413 ntBASIC4.39□□□□□ -1.71
CCDC28BQ9BUN5 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.39□□□□□ -1.71
CCDC28BQ9BUN5 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC28BQ9BUN5 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC28BQ9BUN5 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC28BQ9BUN5 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 RNA5SP322-201ENST00000363617 119 ntBASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 SNORD115-48-201ENST00000364764 76 ntBASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 AC104297.1-201ENST00000393779 870 ntBASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 AC073508.1-201ENST00000428866 656 ntBASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 ZNF965P-201ENST00000432501 817 ntBASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 PSMD10P3-201ENST00000437000 448 ntBASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 PPIAP17-201ENST00000438507 471 ntBASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 AC022431.1-201ENST00000450941 438 ntBASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 AC079804.1-201ENST00000461922 436 ntBASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 AC112206.4-201ENST00000515142 405 ntBASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 AC016550.3-201ENST00000515706 767 ntBASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 MIR2114-201ENST00000516645 80 ntBASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 AC013701.1-201ENST00000522657 465 ntBASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 AL158211.2-201ENST00000607282 395 ntBASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 AC090948.2-201ENST00000607363 564 ntBASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 AL355802.4-201ENST00000607635 548 ntBASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 AC253576.2-201ENST00000618815 580 ntBASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 AC007546.2-201ENST00000623996 360 ntBASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.38□□□□□ -1.71
CCDC28BQ9BUN5 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 NOL8P1-201ENST00000508336 3529 ntBASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 AC017002.4-201ENST00000604721 1525 ntBASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 LINC00622-201ENST00000562811 1570 ntBASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 METTL5-202ENST00000308099 629 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 OR13C3-201ENST00000374781 1108 ntBASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 RNU6-40P-201ENST00000384254 107 ntBASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 SNORD65-201ENST00000391079 73 ntBASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 MIR1282-201ENST00000408865 101 ntBASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 AC092647.1-201ENST00000420654 287 ntBASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 MTND4P24-201ENST00000424002 397 ntBASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 MYO5BP2-201ENST00000449815 1277 ntBASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 AC104763.1-201ENST00000475274 360 ntBASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 AC093663.2-201ENST00000484625 313 ntBASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 IGLV2-34-201ENST00000490007 283 ntBASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 AC109462.1-201ENST00000491087 368 ntBASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 HIGD1AP14-201ENST00000507617 282 ntBASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC28BQ9BUN5 CKS1BP1-201ENST00000555221 240 ntBASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms