Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC073073.1-201ENST00000493920 463 ntBASIC4.78□□□□□ -1.64
VMP1Q96GC9 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
VMP1Q96GC9 PDLIM1P4-201ENST00000504327 1006 ntBASIC4.78□□□□□ -1.64
VMP1Q96GC9 AC005351.1-201ENST00000511152 786 ntBASIC4.78□□□□□ -1.64
VMP1Q96GC9 AC004980.4-201ENST00000513375 203 ntBASIC4.78□□□□□ -1.64
VMP1Q96GC9 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.78□□□□□ -1.64
VMP1Q96GC9 AC010306.1-201ENST00000523223 1117 ntBASIC4.78□□□□□ -1.64
VMP1Q96GC9 C1DP5-201ENST00000525775 383 ntBASIC4.78□□□□□ -1.64
VMP1Q96GC9 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC4.78□□□□□ -1.64
VMP1Q96GC9 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.78□□□□□ -1.64
VMP1Q96GC9 AC005034.4-201ENST00000603612 899 ntBASIC4.78□□□□□ -1.64
VMP1Q96GC9 AC079880.2-201ENST00000603790 1213 ntBASIC4.78□□□□□ -1.64
VMP1Q96GC9 BNIP3P35-201ENST00000604530 490 ntBASIC4.78□□□□□ -1.64
VMP1Q96GC9 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC4.78□□□□□ -1.64
VMP1Q96GC9 AL445222.1-201ENST00000607259 628 ntBASIC4.78□□□□□ -1.64
VMP1Q96GC9 STMN1P1-201ENST00000617809 440 ntBASIC4.78□□□□□ -1.64
VMP1Q96GC9 MIR6864-201ENST00000617935 70 ntBASIC4.78□□□□□ -1.64
VMP1Q96GC9 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC4.78□□□□□ -1.64
VMP1Q96GC9 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC4.78□□□□□ -1.64
VMP1Q96GC9 AC024595.1-201ENST00000623088 387 ntBASIC4.78□□□□□ -1.64
VMP1Q96GC9 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
VMP1Q96GC9 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VMP1Q96GC9 MTCO1P18-201ENST00000455518 1419 ntBASIC4.78□□□□□ -1.64
VMP1Q96GC9 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
VMP1Q96GC9 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
VMP1Q96GC9 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.78□□□□□ -1.64
VMP1Q96GC9 MTND4P26-201ENST00000415971 1359 ntBASIC4.78□□□□□ -1.64
VMP1Q96GC9 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VMP1Q96GC9 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VMP1Q96GC9 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC4.77□□□□□ -1.65
VMP1Q96GC9 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VMP1Q96GC9 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
VMP1Q96GC9 MRRF-207ENST00000373729 870 ntTSL 3 BASIC4.77□□□□□ -1.65
VMP1Q96GC9 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC4.77□□□□□ -1.65
VMP1Q96GC9 RN7SKP114-201ENST00000410327 279 ntBASIC4.77□□□□□ -1.65
VMP1Q96GC9 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC4.77□□□□□ -1.65
VMP1Q96GC9 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.77□□□□□ -1.65
VMP1Q96GC9 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC4.77□□□□□ -1.65
VMP1Q96GC9 AC008065.1-201ENST00000428525 348 ntBASIC4.77□□□□□ -1.65
VMP1Q96GC9 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.77□□□□□ -1.65
VMP1Q96GC9 RPS26P40-201ENST00000435209 294 ntBASIC4.77□□□□□ -1.65
VMP1Q96GC9 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC4.77□□□□□ -1.65
VMP1Q96GC9 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC4.77□□□□□ -1.65
VMP1Q96GC9 AC068135.1-201ENST00000446164 246 ntBASIC4.77□□□□□ -1.65
VMP1Q96GC9 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VMP1Q96GC9 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.77□□□□□ -1.65
VMP1Q96GC9 AC089999.1-201ENST00000460336 374 ntBASIC4.77□□□□□ -1.65
VMP1Q96GC9 RN7SL443P-201ENST00000464331 290 ntBASIC4.77□□□□□ -1.65
VMP1Q96GC9 AC104689.1-201ENST00000473356 768 ntBASIC4.77□□□□□ -1.65
VMP1Q96GC9 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC4.77□□□□□ -1.65
VMP1Q96GC9 RPL32P9-201ENST00000487963 407 ntBASIC4.77□□□□□ -1.65
VMP1Q96GC9 RN7SKP147-201ENST00000517154 244 ntBASIC4.77□□□□□ -1.65
VMP1Q96GC9 AC134698.5-201ENST00000519444 336 ntBASIC4.77□□□□□ -1.65
VMP1Q96GC9 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.77□□□□□ -1.65
VMP1Q96GC9 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.77□□□□□ -1.65
VMP1Q96GC9 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC4.77□□□□□ -1.65
VMP1Q96GC9 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC4.77□□□□□ -1.65
VMP1Q96GC9 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VMP1Q96GC9 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.77□□□□□ -1.65
VMP1Q96GC9 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.77□□□□□ -1.65
VMP1Q96GC9 AC090312.2-201ENST00000582687 378 ntBASIC4.77□□□□□ -1.65
VMP1Q96GC9 EIF3FP1-201ENST00000613970 806 ntBASIC4.77□□□□□ -1.65
VMP1Q96GC9 ERCC6-202ENST00000374127 1782 ntBASIC4.77□□□□□ -1.65
VMP1Q96GC9 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VMP1Q96GC9 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC4.77□□□□□ -1.65
VMP1Q96GC9 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
VMP1Q96GC9 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
VMP1Q96GC9 EEF1A1P36-201ENST00000427807 1351 ntBASIC4.77□□□□□ -1.65
VMP1Q96GC9 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.77□□□□□ -1.65
VMP1Q96GC9 AC053481.2-202ENST00000582394 1500 ntBASIC4.77□□□□□ -1.65
VMP1Q96GC9 MAPK10-286ENST00000641208 8747 ntBASIC4.76□□□□□ -1.65
VMP1Q96GC9 MAPK10-303ENST00000641324 3959 ntBASIC4.76□□□□□ -1.65
VMP1Q96GC9 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
VMP1Q96GC9 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
VMP1Q96GC9 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
VMP1Q96GC9 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
VMP1Q96GC9 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
VMP1Q96GC9 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
VMP1Q96GC9 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
VMP1Q96GC9 RNU4-4P-201ENST00000364588 130 ntBASIC4.76□□□□□ -1.65
VMP1Q96GC9 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
VMP1Q96GC9 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC4.76□□□□□ -1.65
VMP1Q96GC9 AGR3-202ENST00000402239 563 ntTSL 2 BASIC4.76□□□□□ -1.65
VMP1Q96GC9 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC4.76□□□□□ -1.65
VMP1Q96GC9 RN7SKP177-201ENST00000410567 355 ntBASIC4.76□□□□□ -1.65
VMP1Q96GC9 HMGB3P31-201ENST00000413333 595 ntBASIC4.76□□□□□ -1.65
VMP1Q96GC9 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC4.76□□□□□ -1.65
VMP1Q96GC9 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.76□□□□□ -1.65
VMP1Q96GC9 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC4.76□□□□□ -1.65
VMP1Q96GC9 AC009238.2-201ENST00000431026 355 ntBASIC4.76□□□□□ -1.65
VMP1Q96GC9 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.76□□□□□ -1.65
VMP1Q96GC9 AC092809.1-201ENST00000441469 474 ntBASIC4.76□□□□□ -1.65
VMP1Q96GC9 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC4.76□□□□□ -1.65
VMP1Q96GC9 AC108161.1-201ENST00000461060 402 ntBASIC4.76□□□□□ -1.65
VMP1Q96GC9 RN7SL610P-201ENST00000463845 291 ntBASIC4.76□□□□□ -1.65
VMP1Q96GC9 RN7SL97P-201ENST00000486780 299 ntBASIC4.76□□□□□ -1.65
VMP1Q96GC9 HMGN2P25-201ENST00000486956 268 ntBASIC4.76□□□□□ -1.65
VMP1Q96GC9 RN7SL808P-201ENST00000496066 299 ntBASIC4.76□□□□□ -1.65
VMP1Q96GC9 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.76□□□□□ -1.65
VMP1Q96GC9 AC010468.3-201ENST00000508225 458 ntBASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms