Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 TPT1P12-201ENST00000448968 492 ntBASIC4.73□□□□□ -1.65
CCDC112Q8NEF3 RN7SL354P-201ENST00000469282 294 ntBASIC4.73□□□□□ -1.65
CCDC112Q8NEF3 RPL23AP72-201ENST00000492447 435 ntBASIC4.73□□□□□ -1.65
CCDC112Q8NEF3 RN7SL812P-201ENST00000493791 279 ntBASIC4.73□□□□□ -1.65
CCDC112Q8NEF3 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC112Q8NEF3 AP002981.1-201ENST00000517692 975 ntBASIC4.73□□□□□ -1.65
CCDC112Q8NEF3 IGKV2D-10-201ENST00000520194 281 ntBASIC4.73□□□□□ -1.65
CCDC112Q8NEF3 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC112Q8NEF3 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC112Q8NEF3 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC4.73□□□□□ -1.65
CCDC112Q8NEF3 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC112Q8NEF3 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC112Q8NEF3 MIR4284-201ENST00000578924 81 ntBASIC4.73□□□□□ -1.65
CCDC112Q8NEF3 AC073091.2-201ENST00000603205 907 ntBASIC4.73□□□□□ -1.65
CCDC112Q8NEF3 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC4.73□□□□□ -1.65
CCDC112Q8NEF3 MIR378J-201ENST00000611988 109 ntBASIC4.73□□□□□ -1.65
CCDC112Q8NEF3 AL731566.2-201ENST00000618971 317 ntBASIC4.73□□□□□ -1.65
CCDC112Q8NEF3 AC006065.6-201ENST00000625201 545 ntBASIC4.73□□□□□ -1.65
CCDC112Q8NEF3 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC4.73□□□□□ -1.65
CCDC112Q8NEF3 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
CCDC112Q8NEF3 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
CCDC112Q8NEF3 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.73□□□□□ -1.65
CCDC112Q8NEF3 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.73□□□□□ -1.65
CCDC112Q8NEF3 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
CCDC112Q8NEF3 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 AC026951.1-201ENST00000559530 2459 ntBASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 COX6CP17-201ENST00000421389 185 ntBASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 RPL7P4-203ENST00000430239 730 ntBASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 AC068287.1-201ENST00000430283 295 ntBASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 RPL7P28-201ENST00000437739 740 ntBASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 AC005154.2-201ENST00000438110 379 ntBASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 AF228730.2-201ENST00000438784 848 ntBASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 RPL23AP89-201ENST00000439324 255 ntBASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 TXNP2-201ENST00000443918 295 ntBASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 RAD23BP3-201ENST00000454157 1152 ntBASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 AC109458.1-201ENST00000508858 316 ntBASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 RN7SKP276-201ENST00000516242 268 ntBASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 OR2L1P-202ENST00000641567 1023 ntBASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
CCDC112Q8NEF3 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
CCDC112Q8NEF3 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 RNU6-1320P-201ENST00000390838 107 ntBASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 RNU6-1269P-201ENST00000391139 107 ntBASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 SNORA3C-201ENST00000408792 125 ntBASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 AC092570.3-201ENST00000420113 693 ntBASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 C4BPAP2-201ENST00000428434 478 ntBASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 AL132765.1-201ENST00000434165 553 ntBASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 RNU6-599P-201ENST00000459383 107 ntBASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 RNU6-1193P-201ENST00000459461 107 ntBASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 AC096741.1-201ENST00000472250 846 ntBASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 AC104164.2-201ENST00000496953 495 ntBASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 AC015911.5-201ENST00000587076 451 ntBASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 AL159169.2-201ENST00000610061 1269 ntBASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 AC064801.1-201ENST00000612025 407 ntBASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 RNU6-368P-201ENST00000620928 107 ntBASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 RNU6-538P-201ENST00000622329 107 ntBASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 FP325313.1-201ENST00000638228 703 ntBASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
CCDC112Q8NEF3 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC112Q8NEF3 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.7□□□□□ -1.66
CCDC112Q8NEF3 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC112Q8NEF3 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC112Q8NEF3 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC112Q8NEF3 RNU1-32P-201ENST00000363937 159 ntBASIC4.7□□□□□ -1.66
CCDC112Q8NEF3 RNA5SP505-201ENST00000364748 108 ntBASIC4.7□□□□□ -1.66
CCDC112Q8NEF3 SNORA62-201ENST00000365493 153 ntBASIC4.7□□□□□ -1.66
CCDC112Q8NEF3 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
CCDC112Q8NEF3 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.7□□□□□ -1.66
CCDC112Q8NEF3 SLC9B1P4-201ENST00000421957 1288 ntBASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms