Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 CCNB2P1-201ENST00000399411 1150 ntBASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 NUDT19P3-201ENST00000404698 555 ntBASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 AP000357.1-201ENST00000409926 1165 ntBASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 CYCSP10-201ENST00000417973 294 ntBASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 AC004448.2-201ENST00000422360 586 ntBASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 DDX39BP1-205ENST00000422507 192 ntBASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 FTH1P6-201ENST00000430768 320 ntBASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 BX323845.1-201ENST00000432417 179 ntBASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 AC092685.1-201ENST00000447960 1243 ntBASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 PPIAP3-201ENST00000450588 505 ntBASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 ATP5A1P7-201ENST00000453978 1279 ntBASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 SNRPGP5-201ENST00000456003 220 ntBASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 RPL21P71-201ENST00000465598 459 ntBASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 AC009127.1-201ENST00000467090 155 ntBASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 PDLIM1P4-201ENST00000504327 1006 ntBASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 AC110792.2-201ENST00000510278 224 ntBASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 UBE2Q2P10-201ENST00000514854 900 ntBASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 MAL2-208ENST00000523307 556 ntTSL 4 BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 AC012414.2-201ENST00000559474 187 ntBASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 AC103792.1-201ENST00000603591 919 ntBASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 C2orf27A-204ENST00000623058 969 ntBASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 EOGT-210ENST00000615922 1931 ntBASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 METTL21EP-201ENST00000298105 713 ntBASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 Z97832.1-201ENST00000402490 328 ntBASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 HMGB1P13-201ENST00000406019 642 ntBASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 AL080315.1-201ENST00000406055 466 ntBASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 AC092832.1-201ENST00000422934 400 ntBASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 IGKV1OR9-1-201ENST00000424370 284 ntBASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 AC097484.1-201ENST00000471148 389 ntBASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 RN7SL41P-201ENST00000476144 297 ntBASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 OR9N1P-202ENST00000494289 481 ntBASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 RN7SKP147-201ENST00000517154 244 ntBASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 AC026688.1-201ENST00000520639 1168 ntBASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 AC022784.5-201ENST00000522241 437 ntBASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 NOP10-202ENST00000557912 436 ntTSL 2 BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 AC016911.1-201ENST00000613297 452 ntBASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 IRF5P1-201ENST00000504852 2164 ntBASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.44□□□□□ -1.7
ZNF540Q8NDQ6 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 ERCC6-202ENST00000374127 1782 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms