Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 HPVC1-201ENST00000629899 1198 ntBASIC4.06□□□□□ -1.76
SKA3Q8IX90 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
SKA3Q8IX90 AL355852.1-201ENST00000454081 1771 ntBASIC4.06□□□□□ -1.76
SKA3Q8IX90 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
SKA3Q8IX90 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
SKA3Q8IX90 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
SKA3Q8IX90 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
SKA3Q8IX90 AL672167.1-203ENST00000641299 2975 ntBASIC4.05□□□□□ -1.76
SKA3Q8IX90 AC135352.1-201ENST00000506173 1418 ntBASIC4.05□□□□□ -1.76
SKA3Q8IX90 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
SKA3Q8IX90 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
SKA3Q8IX90 AC103591.2-201ENST00000265259 766 ntBASIC4.05□□□□□ -1.76
SKA3Q8IX90 RNA5SP52-201ENST00000362448 134 ntBASIC4.05□□□□□ -1.76
SKA3Q8IX90 RNU6-178P-201ENST00000384631 104 ntBASIC4.05□□□□□ -1.76
SKA3Q8IX90 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
SKA3Q8IX90 AL603766.1-201ENST00000407763 664 ntBASIC4.05□□□□□ -1.76
SKA3Q8IX90 RPA2P2-201ENST00000419698 796 ntBASIC4.05□□□□□ -1.76
SKA3Q8IX90 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC4.05□□□□□ -1.76
SKA3Q8IX90 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC4.05□□□□□ -1.76
SKA3Q8IX90 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC4.05□□□□□ -1.76
SKA3Q8IX90 AC245517.2-201ENST00000442890 346 ntBASIC4.05□□□□□ -1.76
SKA3Q8IX90 AL353898.1-201ENST00000444055 238 ntBASIC4.05□□□□□ -1.76
SKA3Q8IX90 RPS15AP29-201ENST00000445539 400 ntBASIC4.05□□□□□ -1.76
SKA3Q8IX90 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC4.05□□□□□ -1.76
SKA3Q8IX90 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC4.05□□□□□ -1.76
SKA3Q8IX90 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC4.05□□□□□ -1.76
SKA3Q8IX90 AL451050.1-201ENST00000450126 415 ntBASIC4.05□□□□□ -1.76
SKA3Q8IX90 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC4.05□□□□□ -1.76
SKA3Q8IX90 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC4.05□□□□□ -1.76
SKA3Q8IX90 APOOP2-201ENST00000461561 539 ntBASIC4.05□□□□□ -1.76
SKA3Q8IX90 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
SKA3Q8IX90 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.05□□□□□ -1.76
SKA3Q8IX90 AC007016.1-201ENST00000512110 244 ntBASIC4.05□□□□□ -1.76
SKA3Q8IX90 MTND2P31-201ENST00000512602 616 ntBASIC4.05□□□□□ -1.76
SKA3Q8IX90 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC4.05□□□□□ -1.76
SKA3Q8IX90 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.05□□□□□ -1.76
SKA3Q8IX90 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.05□□□□□ -1.76
SKA3Q8IX90 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.05□□□□□ -1.76
SKA3Q8IX90 CYCSP28-201ENST00000534284 321 ntBASIC4.05□□□□□ -1.76
SKA3Q8IX90 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC4.05□□□□□ -1.76
SKA3Q8IX90 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC4.05□□□□□ -1.76
SKA3Q8IX90 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC4.05□□□□□ -1.76
SKA3Q8IX90 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.05□□□□□ -1.76
SKA3Q8IX90 AC025946.2-201ENST00000603398 234 ntBASIC4.05□□□□□ -1.76
SKA3Q8IX90 AL161616.1-201ENST00000611867 286 ntBASIC4.05□□□□□ -1.76
SKA3Q8IX90 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC4.05□□□□□ -1.76
SKA3Q8IX90 AL391684.1-202ENST00000641293 1636 ntBASIC4.05□□□□□ -1.76
SKA3Q8IX90 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.05□□□□□ -1.76
SKA3Q8IX90 ZNF137P-201ENST00000456718 1920 ntBASIC4.05□□□□□ -1.76
SKA3Q8IX90 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC4.05□□□□□ -1.76
SKA3Q8IX90 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC4.05□□□□□ -1.76
SKA3Q8IX90 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
SKA3Q8IX90 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SKA3Q8IX90 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SKA3Q8IX90 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SKA3Q8IX90 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.04□□□□□ -1.76
SKA3Q8IX90 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SKA3Q8IX90 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SKA3Q8IX90 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC4.04□□□□□ -1.76
SKA3Q8IX90 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SKA3Q8IX90 RNU6-31P-201ENST00000384388 108 ntBASIC4.04□□□□□ -1.76
SKA3Q8IX90 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
SKA3Q8IX90 AL049697.2-201ENST00000403708 294 ntBASIC4.04□□□□□ -1.76
SKA3Q8IX90 GSTM3P2-201ENST00000412746 530 ntBASIC4.04□□□□□ -1.76
SKA3Q8IX90 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC4.04□□□□□ -1.76
SKA3Q8IX90 AC022022.1-201ENST00000430304 178 ntBASIC4.04□□□□□ -1.76
SKA3Q8IX90 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SKA3Q8IX90 MTND2P21-201ENST00000436242 1042 ntBASIC4.04□□□□□ -1.76
SKA3Q8IX90 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.04□□□□□ -1.76
SKA3Q8IX90 AL500527.1-201ENST00000448532 255 ntBASIC4.04□□□□□ -1.76
SKA3Q8IX90 CEACAMP6-201ENST00000452007 574 ntBASIC4.04□□□□□ -1.76
SKA3Q8IX90 ISCUP1-201ENST00000454451 448 ntBASIC4.04□□□□□ -1.76
SKA3Q8IX90 RPL23AP65-201ENST00000475608 468 ntBASIC4.04□□□□□ -1.76
SKA3Q8IX90 RPS4XP18-201ENST00000495480 763 ntBASIC4.04□□□□□ -1.76
SKA3Q8IX90 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC4.04□□□□□ -1.76
SKA3Q8IX90 MTND4LP2-201ENST00000502312 285 ntBASIC4.04□□□□□ -1.76
SKA3Q8IX90 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC4.04□□□□□ -1.76
SKA3Q8IX90 MGST2-204ENST00000506797 634 ntTSL 2 BASIC4.04□□□□□ -1.76
SKA3Q8IX90 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SKA3Q8IX90 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC4.04□□□□□ -1.76
SKA3Q8IX90 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC4.04□□□□□ -1.76
SKA3Q8IX90 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC4.04□□□□□ -1.76
SKA3Q8IX90 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC4.04□□□□□ -1.76
SKA3Q8IX90 AC209154.1-201ENST00000582156 337 ntBASIC4.04□□□□□ -1.76
SKA3Q8IX90 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SKA3Q8IX90 AC068020.1-201ENST00000594215 661 ntBASIC4.04□□□□□ -1.76
SKA3Q8IX90 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC4.04□□□□□ -1.76
SKA3Q8IX90 AL139286.1-201ENST00000604465 483 ntBASIC4.04□□□□□ -1.76
SKA3Q8IX90 AC034236.3-201ENST00000605999 461 ntBASIC4.04□□□□□ -1.76
SKA3Q8IX90 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.04□□□□□ -1.76
SKA3Q8IX90 MIR4727-201ENST00000622232 55 ntBASIC4.04□□□□□ -1.76
SKA3Q8IX90 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC4.04□□□□□ -1.76
SKA3Q8IX90 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC4.04□□□□□ -1.76
SKA3Q8IX90 AC108467.2-201ENST00000617640 1597 ntBASIC4.04□□□□□ -1.76
SKA3Q8IX90 VPS35P1-201ENST00000563400 1518 ntBASIC4.04□□□□□ -1.76
SKA3Q8IX90 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SKA3Q8IX90 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC4.04□□□□□ -1.76
SKA3Q8IX90 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SKA3Q8IX90 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 129.1 ms