Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 IGKV1OR2-6-201ENST00000603485 277 ntBASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AC012368.3-201ENST00000604190 219 ntBASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 CXADRP3-202ENST00000617265 1100 ntBASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AC073862.2-201ENST00000625114 701 ntBASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AC006065.6-201ENST00000625201 545 ntBASIC2.51□□□□□ -2.01
LINC00643Q86TS7 FP325313.1-201ENST00000638228 703 ntBASIC2.51□□□□□ -2.01
LINC00643Q86TS7 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AL353746.1-201ENST00000566293 6881 ntBASIC2.51□□□□□ -2.01
LINC00643Q86TS7 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AL133383.2-201ENST00000622958 2336 ntBASIC2.51□□□□□ -2.01
LINC00643Q86TS7 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
LINC00643Q86TS7 AC099654.2-201ENST00000433031 1980 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 AC108467.2-201ENST00000617640 1597 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 SPIN2B-201ENST00000275988 1152 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 SNORA67-201ENST00000384423 137 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 U3.30-201ENST00000391308 210 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 MIR1251-201ENST00000408552 70 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 RNU2-37P-201ENST00000410695 177 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 CDY17P-201ENST00000414121 1282 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 OR5AW1P-201ENST00000426334 1006 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 CDY8P-201ENST00000428380 1279 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 AL049745.1-201ENST00000433953 286 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 SETP5-201ENST00000437270 562 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 CR391992.1-201ENST00000438601 394 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 ELOCP10-201ENST00000440624 327 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 AC114495.1-201ENST00000441274 436 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 EIF2S2P2-201ENST00000447161 982 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 CDY20P-201ENST00000447528 1279 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 RPS27AP17-201ENST00000463344 455 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 RN7SL393P-201ENST00000463588 296 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 RPL7P22-201ENST00000466005 733 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 RN7SL319P-201ENST00000480656 221 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 RAB7A-205ENST00000485280 507 ntTSL 3 BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 AC015864.1-201ENST00000496512 544 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 FTH1P24-201ENST00000503502 462 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 KCTD9P5-201ENST00000504141 1170 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 AC110768.1-201ENST00000509222 400 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 Y_RNA.667-201ENST00000516212 107 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 TRAPPC2P2-201ENST00000517589 409 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 AC068657.1-201ENST00000520807 306 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 IGLVI-70-201ENST00000523272 390 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 BMPR1APS2-201ENST00000527904 1012 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 MEG8-217ENST00000556637 924 ntTSL 5 BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 ZNF192P1-203ENST00000565888 810 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 AL161729.3-201ENST00000603533 673 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 AL049844.2-201ENST00000604280 628 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 ELOCP34-201ENST00000604436 327 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 AC097717.1-251ENST00000608419 183 ntTSL 5 BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 AC090527.3-201ENST00000619041 548 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 UOX-205ENST00000640983 544 ntTSL 4 BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 AL079305.1-201ENST00000623159 3008 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 BRAFP1-201ENST00000445336 2703 ntBASIC2.5□□□□□ -2.01
LINC00643Q86TS7 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
LINC00643Q86TS7 EEF1A1P36-201ENST00000427807 1351 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 AC119744.1-201ENST00000454746 1715 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 AC009229.4-201ENST00000623854 1947 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 MAPK10-362ENST00000641864 4484 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms