Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 AC104687.1-201ENST00000485829 412 ntBASIC4.91□□□□□ -1.62
COL28A1Q2UY09 AK3P4-201ENST00000504283 583 ntBASIC4.91□□□□□ -1.62
COL28A1Q2UY09 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 AC110760.3-202ENST00000515177 371 ntBASIC4.91□□□□□ -1.62
COL28A1Q2UY09 IGKV1-32-201ENST00000519290 311 ntBASIC4.91□□□□□ -1.62
COL28A1Q2UY09 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 ZKSCAN7P1-201ENST00000543668 673 ntBASIC4.91□□□□□ -1.62
COL28A1Q2UY09 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 AL390334.1-201ENST00000556395 450 ntBASIC4.91□□□□□ -1.62
COL28A1Q2UY09 MIR4789-201ENST00000577469 82 ntBASIC4.91□□□□□ -1.62
COL28A1Q2UY09 RN7SL356P-201ENST00000582228 248 ntBASIC4.91□□□□□ -1.62
COL28A1Q2UY09 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 UBA2-208ENST00000592791 910 ntTSL 2 BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 ZNF92P3-201ENST00000596594 954 ntBASIC4.91□□□□□ -1.62
COL28A1Q2UY09 AC108738.1-201ENST00000603703 237 ntBASIC4.91□□□□□ -1.62
COL28A1Q2UY09 AC009027.1-201ENST00000604510 479 ntBASIC4.91□□□□□ -1.62
COL28A1Q2UY09 AC244107.2-201ENST00000611773 76 ntBASIC4.91□□□□□ -1.62
COL28A1Q2UY09 AL050303.3-201ENST00000613704 284 ntBASIC4.91□□□□□ -1.62
COL28A1Q2UY09 AC022079.2-201ENST00000619739 566 ntBASIC4.91□□□□□ -1.62
COL28A1Q2UY09 AC084824.4-201ENST00000620106 731 ntBASIC4.91□□□□□ -1.62
COL28A1Q2UY09 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC4.9□□□□□ -1.62
COL28A1Q2UY09 AC083843.2-201ENST00000568248 6253 ntBASIC4.9□□□□□ -1.62
COL28A1Q2UY09 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
COL28A1Q2UY09 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC4.9□□□□□ -1.62
COL28A1Q2UY09 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
COL28A1Q2UY09 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 IGKV7-3-201ENST00000357453 298 ntBASIC4.9□□□□□ -1.63
COL28A1Q2UY09 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 AC004854.1-201ENST00000440356 349 ntBASIC4.9□□□□□ -1.63
COL28A1Q2UY09 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 RPL36AP15-201ENST00000444514 266 ntBASIC4.9□□□□□ -1.63
COL28A1Q2UY09 ARL5AP2-201ENST00000444698 533 ntBASIC4.9□□□□□ -1.63
COL28A1Q2UY09 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 AC104634.1-201ENST00000452720 462 ntBASIC4.9□□□□□ -1.63
COL28A1Q2UY09 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 HMGB1P4-201ENST00000455362 567 ntBASIC4.9□□□□□ -1.63
COL28A1Q2UY09 AC021660.1-201ENST00000465006 554 ntBASIC4.9□□□□□ -1.63
COL28A1Q2UY09 COX6B1P5-201ENST00000509843 249 ntBASIC4.9□□□□□ -1.63
COL28A1Q2UY09 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 HMGN1P9-201ENST00000515212 298 ntBASIC4.9□□□□□ -1.63
COL28A1Q2UY09 RPS27AP18-201ENST00000515536 459 ntBASIC4.9□□□□□ -1.63
COL28A1Q2UY09 RGS5-219ENST00000528019 512 ntTSL 4 BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 YWHABP2-201ENST00000540201 713 ntBASIC4.9□□□□□ -1.63
COL28A1Q2UY09 CYB5AP5-201ENST00000549779 389 ntBASIC4.9□□□□□ -1.63
COL28A1Q2UY09 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 RN7SL339P-201ENST00000580597 296 ntBASIC4.9□□□□□ -1.63
COL28A1Q2UY09 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 VN1R87P-201ENST00000596706 487 ntBASIC4.9□□□□□ -1.63
COL28A1Q2UY09 AC125494.3-201ENST00000602759 455 ntBASIC4.9□□□□□ -1.63
COL28A1Q2UY09 AC090525.3-201ENST00000605601 189 ntBASIC4.9□□□□□ -1.63
COL28A1Q2UY09 AC034229.4-201ENST00000607861 441 ntBASIC4.9□□□□□ -1.63
COL28A1Q2UY09 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 AC005962.2-201ENST00000611427 652 ntBASIC4.9□□□□□ -1.63
COL28A1Q2UY09 AC092079.1-201ENST00000558620 1985 ntBASIC4.9□□□□□ -1.63
COL28A1Q2UY09 AL731532.2-201ENST00000623542 1953 ntBASIC4.9□□□□□ -1.63
COL28A1Q2UY09 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.9□□□□□ -1.63
COL28A1Q2UY09 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 MUC2-202ENST00000613187 4845 ntBASIC4.89□□□□□ -1.63
COL28A1Q2UY09 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 RNU6-543P-201ENST00000362576 108 ntBASIC4.89□□□□□ -1.63
COL28A1Q2UY09 RNU5B-1-201ENST00000363286 116 ntBASIC4.89□□□□□ -1.63
COL28A1Q2UY09 RNU6-236P-201ENST00000363886 106 ntBASIC4.89□□□□□ -1.63
COL28A1Q2UY09 RNA5SP428-201ENST00000365129 132 ntBASIC4.89□□□□□ -1.63
COL28A1Q2UY09 RNU6-98P-201ENST00000384173 107 ntBASIC4.89□□□□□ -1.63
COL28A1Q2UY09 DNAJC19P6-201ENST00000401853 280 ntBASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms