Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC3.97□□□□□ -1.77
FOXA1P55317 SNORA26.10-201ENST00000516427 141 ntBASIC3.97□□□□□ -1.77
FOXA1P55317 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC3.97□□□□□ -1.77
FOXA1P55317 TVP23BP1-201ENST00000557500 617 ntBASIC3.97□□□□□ -1.77
FOXA1P55317 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC3.97□□□□□ -1.77
FOXA1P55317 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC3.97□□□□□ -1.77
FOXA1P55317 AC104785.1-201ENST00000603220 588 ntBASIC3.97□□□□□ -1.77
FOXA1P55317 QTRT1P1-201ENST00000604344 1078 ntBASIC3.97□□□□□ -1.77
FOXA1P55317 AC104662.1-201ENST00000604448 511 ntBASIC3.97□□□□□ -1.77
FOXA1P55317 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC3.97□□□□□ -1.77
FOXA1P55317 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
FOXA1P55317 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC3.97□□□□□ -1.77
FOXA1P55317 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
FOXA1P55317 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
FOXA1P55317 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.97□□□□□ -1.77
FOXA1P55317 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
FOXA1P55317 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
FOXA1P55317 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
FOXA1P55317 AC116667.1-201ENST00000604855 2072 ntBASIC3.96□□□□□ -1.77
FOXA1P55317 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC3.96□□□□□ -1.78
FOXA1P55317 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
FOXA1P55317 IQCB2P-201ENST00000401788 1633 ntBASIC3.96□□□□□ -1.78
FOXA1P55317 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC3.96□□□□□ -1.78
FOXA1P55317 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
FOXA1P55317 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
FOXA1P55317 U3.22-201ENST00000391120 215 ntBASIC3.96□□□□□ -1.78
FOXA1P55317 AL161909.1-201ENST00000397390 712 ntBASIC3.96□□□□□ -1.78
FOXA1P55317 RN7SKP182-201ENST00000410772 298 ntBASIC3.96□□□□□ -1.78
FOXA1P55317 RPS27AP7-201ENST00000422792 455 ntBASIC3.96□□□□□ -1.78
FOXA1P55317 NIPA2P1-201ENST00000426223 976 ntBASIC3.96□□□□□ -1.78
FOXA1P55317 YWHAEP5-201ENST00000431545 765 ntBASIC3.96□□□□□ -1.78
FOXA1P55317 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC3.96□□□□□ -1.78
FOXA1P55317 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC3.96□□□□□ -1.78
FOXA1P55317 RPL23AP46-201ENST00000438548 490 ntBASIC3.96□□□□□ -1.78
FOXA1P55317 AL138878.2-201ENST00000440581 1241 ntBASIC3.96□□□□□ -1.78
FOXA1P55317 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC3.96□□□□□ -1.78
FOXA1P55317 VN1R25P-201ENST00000443385 738 ntBASIC3.96□□□□□ -1.78
FOXA1P55317 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC3.96□□□□□ -1.78
FOXA1P55317 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC3.96□□□□□ -1.78
FOXA1P55317 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC3.96□□□□□ -1.78
FOXA1P55317 VN1R40P-201ENST00000455196 941 ntBASIC3.96□□□□□ -1.78
FOXA1P55317 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC3.96□□□□□ -1.78
FOXA1P55317 RNA5SP246-201ENST00000458909 119 ntBASIC3.96□□□□□ -1.78
FOXA1P55317 RN7SL481P-201ENST00000477764 299 ntBASIC3.96□□□□□ -1.78
FOXA1P55317 OR9N1P-201ENST00000491296 333 ntBASIC3.96□□□□□ -1.78
FOXA1P55317 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC3.96□□□□□ -1.78
FOXA1P55317 HPRT1P2-201ENST00000505250 544 ntBASIC3.96□□□□□ -1.78
FOXA1P55317 RNU6-1334P-201ENST00000516032 105 ntBASIC3.96□□□□□ -1.78
FOXA1P55317 RNA5SP228-201ENST00000516232 133 ntBASIC3.96□□□□□ -1.78
FOXA1P55317 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC3.96□□□□□ -1.78
FOXA1P55317 HIGD1AP5-201ENST00000529959 259 ntBASIC3.96□□□□□ -1.78
FOXA1P55317 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC3.96□□□□□ -1.78
FOXA1P55317 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
FOXA1P55317 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC3.96□□□□□ -1.78
FOXA1P55317 AC012417.1-201ENST00000582307 1039 ntBASIC3.96□□□□□ -1.78
FOXA1P55317 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC3.96□□□□□ -1.78
FOXA1P55317 AC005191.1-201ENST00000603950 358 ntBASIC3.96□□□□□ -1.78
FOXA1P55317 AC133552.5-201ENST00000604266 540 ntBASIC3.96□□□□□ -1.78
FOXA1P55317 AL008729.2-201ENST00000606393 473 ntBASIC3.96□□□□□ -1.78
FOXA1P55317 MIR6820-201ENST00000611508 62 ntBASIC3.96□□□□□ -1.78
FOXA1P55317 AL121873.1-201ENST00000616013 524 ntBASIC3.96□□□□□ -1.78
FOXA1P55317 MIR7151-201ENST00000617477 60 ntBASIC3.96□□□□□ -1.78
FOXA1P55317 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC3.96□□□□□ -1.78
FOXA1P55317 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
FOXA1P55317 AC012618.3-205ENST00000637896 1496 ntBASIC3.96□□□□□ -1.78
FOXA1P55317 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
FOXA1P55317 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
FOXA1P55317 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
FOXA1P55317 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
FOXA1P55317 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC3.95□□□□□ -1.78
FOXA1P55317 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC3.95□□□□□ -1.78
FOXA1P55317 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC3.95□□□□□ -1.78
FOXA1P55317 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
FOXA1P55317 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
FOXA1P55317 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.95□□□□□ -1.78
FOXA1P55317 CDY11P-201ENST00000447168 1651 ntBASIC3.95□□□□□ -1.78
FOXA1P55317 IGKV7-3-201ENST00000357453 298 ntBASIC3.95□□□□□ -1.78
FOXA1P55317 RNU4-39P-201ENST00000362455 127 ntBASIC3.95□□□□□ -1.78
FOXA1P55317 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC3.95□□□□□ -1.78
FOXA1P55317 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
FOXA1P55317 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
FOXA1P55317 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC3.95□□□□□ -1.78
FOXA1P55317 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
FOXA1P55317 SNORA79B-201ENST00000410557 148 ntBASIC3.95□□□□□ -1.78
FOXA1P55317 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.95□□□□□ -1.78
FOXA1P55317 MTND2P11-201ENST00000423638 648 ntBASIC3.95□□□□□ -1.78
FOXA1P55317 CNOT7P1-201ENST00000429006 852 ntBASIC3.95□□□□□ -1.78
FOXA1P55317 COX6B1P7-201ENST00000430845 235 ntBASIC3.95□□□□□ -1.78
FOXA1P55317 RPSAP41-201ENST00000439695 860 ntBASIC3.95□□□□□ -1.78
FOXA1P55317 HMGB3P9-201ENST00000441799 583 ntBASIC3.95□□□□□ -1.78
FOXA1P55317 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC3.95□□□□□ -1.78
FOXA1P55317 RPS29P33-201ENST00000456717 146 ntBASIC3.95□□□□□ -1.78
FOXA1P55317 AC011276.1-201ENST00000469688 323 ntBASIC3.95□□□□□ -1.78
FOXA1P55317 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
FOXA1P55317 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC3.95□□□□□ -1.78
FOXA1P55317 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC3.95□□□□□ -1.78
FOXA1P55317 AF186190.1-201ENST00000517470 480 ntBASIC3.95□□□□□ -1.78
FOXA1P55317 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC3.95□□□□□ -1.78
FOXA1P55317 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
FOXA1P55317 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms