Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 PRELID3BP10-201ENST00000431957 584 ntBASIC4.49□□□□□ -1.69
COL4A4P53420 RPL35AP15-201ENST00000468042 339 ntBASIC4.49□□□□□ -1.69
COL4A4P53420 PANCR-201ENST00000503456 493 ntTSL 5 BASIC4.49□□□□□ -1.69
COL4A4P53420 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC4.49□□□□□ -1.69
COL4A4P53420 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC4.49□□□□□ -1.69
COL4A4P53420 AC007066.2-202ENST00000566531 914 ntBASIC4.49□□□□□ -1.69
COL4A4P53420 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC4.49□□□□□ -1.69
COL4A4P53420 MIR3200-201ENST00000580767 85 ntBASIC4.49□□□□□ -1.69
COL4A4P53420 AC010487.1-201ENST00000594408 1172 ntBASIC4.49□□□□□ -1.69
COL4A4P53420 AC023509.5-201ENST00000617434 807 ntBASIC4.49□□□□□ -1.69
COL4A4P53420 MIR7154-201ENST00000620673 73 ntBASIC4.49□□□□□ -1.69
COL4A4P53420 AC024023.1-201ENST00000624530 922 ntBASIC4.49□□□□□ -1.69
COL4A4P53420 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC4.49□□□□□ -1.69
COL4A4P53420 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
COL4A4P53420 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
COL4A4P53420 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.49□□□□□ -1.69
COL4A4P53420 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
COL4A4P53420 ZNF285B-201ENST00000561698 1767 ntBASIC4.49□□□□□ -1.69
COL4A4P53420 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL4A4P53420 CASC19-284ENST00000642142 1868 ntBASIC4.49□□□□□ -1.69
COL4A4P53420 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL4A4P53420 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
COL4A4P53420 AL390036.1-202ENST00000634635 2439 ntTSL 5 BASIC4.49□□□□□ -1.69
COL4A4P53420 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.49□□□□□ -1.69
COL4A4P53420 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC4.48□□□□□ -1.69
COL4A4P53420 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
COL4A4P53420 AL356968.2-201ENST00000412769 1257 ntBASIC4.48□□□□□ -1.69
COL4A4P53420 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC4.48□□□□□ -1.69
COL4A4P53420 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.48□□□□□ -1.69
COL4A4P53420 AL139350.1-201ENST00000448825 408 ntTSL 3 BASIC4.48□□□□□ -1.69
COL4A4P53420 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.48□□□□□ -1.69
COL4A4P53420 BNIP3P41-201ENST00000503774 571 ntBASIC4.48□□□□□ -1.69
COL4A4P53420 AC006499.5-201ENST00000505037 514 ntBASIC4.48□□□□□ -1.69
COL4A4P53420 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC4.48□□□□□ -1.69
COL4A4P53420 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.48□□□□□ -1.69
COL4A4P53420 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
COL4A4P53420 BNIP3P41-202ENST00000616656 861 ntBASIC4.48□□□□□ -1.69
COL4A4P53420 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL4A4P53420 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
COL4A4P53420 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
COL4A4P53420 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC4.48□□□□□ -1.69
COL4A4P53420 AC093591.2-201ENST00000565254 3843 ntBASIC4.48□□□□□ -1.69
COL4A4P53420 AC116667.1-201ENST00000604855 2072 ntBASIC4.48□□□□□ -1.69
COL4A4P53420 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.48□□□□□ -1.69
COL4A4P53420 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
COL4A4P53420 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL4A4P53420 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL4A4P53420 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
COL4A4P53420 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL4A4P53420 MIR634-201ENST00000385208 97 ntBASIC4.48□□□□□ -1.69
COL4A4P53420 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC4.48□□□□□ -1.69
COL4A4P53420 SOD1P3-201ENST00000518682 454 ntBASIC4.48□□□□□ -1.69
COL4A4P53420 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC4.48□□□□□ -1.69
COL4A4P53420 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL4A4P53420 PACRG-211ENST00000621363 360 ntTSL 5 BASIC4.48□□□□□ -1.69
COL4A4P53420 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
COL4A4P53420 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC4.47□□□□□ -1.69
COL4A4P53420 AC016588.2-201ENST00000632484 3021 ntBASIC4.47□□□□□ -1.69
COL4A4P53420 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL4A4P53420 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC4.47□□□□□ -1.69
COL4A4P53420 FAM91A3P-201ENST00000456826 2544 ntBASIC4.47□□□□□ -1.69
COL4A4P53420 HSPE1P12-201ENST00000412576 301 ntBASIC4.47□□□□□ -1.69
COL4A4P53420 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.47□□□□□ -1.69
COL4A4P53420 DNAJA1P1-201ENST00000425106 1187 ntBASIC4.47□□□□□ -1.69
COL4A4P53420 DYNLL1P7-201ENST00000429273 258 ntBASIC4.47□□□□□ -1.69
COL4A4P53420 NANOGP10-201ENST00000453325 895 ntBASIC4.47□□□□□ -1.69
COL4A4P53420 AC005008.1-201ENST00000456151 612 ntBASIC4.47□□□□□ -1.69
COL4A4P53420 ACTR3P3-201ENST00000480448 893 ntBASIC4.47□□□□□ -1.69
COL4A4P53420 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.47□□□□□ -1.69
COL4A4P53420 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.47□□□□□ -1.69
COL4A4P53420 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.47□□□□□ -1.69
COL4A4P53420 AL031666.3-201ENST00000609320 1006 ntBASIC4.47□□□□□ -1.69
COL4A4P53420 AL391261.4-201ENST00000616012 481 ntBASIC4.47□□□□□ -1.69
COL4A4P53420 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.47□□□□□ -1.69
COL4A4P53420 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC4.47□□□□□ -1.69
COL4A4P53420 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL4A4P53420 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL4A4P53420 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.47□□□□□ -1.69
COL4A4P53420 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC4.47□□□□□ -1.69
COL4A4P53420 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.69
COL4A4P53420 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC4.46□□□□□ -1.69
COL4A4P53420 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
COL4A4P53420 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.46□□□□□ -1.69
COL4A4P53420 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.46□□□□□ -1.7
COL4A4P53420 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
COL4A4P53420 AC006042.3-201ENST00000454684 1469 ntBASIC4.46□□□□□ -1.7
COL4A4P53420 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
COL4A4P53420 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.46□□□□□ -1.7
COL4A4P53420 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.46□□□□□ -1.7
COL4A4P53420 RPL36AP13-201ENST00000457490 317 ntBASIC4.46□□□□□ -1.7
COL4A4P53420 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC4.46□□□□□ -1.7
COL4A4P53420 ATP1B1P1-201ENST00000509767 915 ntBASIC4.46□□□□□ -1.7
COL4A4P53420 AC021146.3-201ENST00000511911 260 ntBASIC4.46□□□□□ -1.7
COL4A4P53420 RN7SKP141-201ENST00000516167 338 ntBASIC4.46□□□□□ -1.7
COL4A4P53420 OR5M7P-201ENST00000526140 972 ntBASIC4.46□□□□□ -1.7
COL4A4P53420 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.46□□□□□ -1.7
COL4A4P53420 AC037471.2-201ENST00000564941 598 ntBASIC4.46□□□□□ -1.7
COL4A4P53420 ADAM3B-201ENST00000569937 840 ntBASIC4.46□□□□□ -1.7
COL4A4P53420 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.46□□□□□ -1.7
COL4A4P53420 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms