Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
MSH6P52701 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC5.9□□□□□ -1.47
MSH6P52701 TPT1P1-201ENST00000458495 518 ntBASIC5.9□□□□□ -1.47
MSH6P52701 PLGLA-201ENST00000465668 449 ntBASIC5.9□□□□□ -1.47
MSH6P52701 RPL7P9-201ENST00000468715 747 ntBASIC5.9□□□□□ -1.47
MSH6P52701 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC5.9□□□□□ -1.47
MSH6P52701 AL139099.1-201ENST00000497398 403 ntBASIC5.9□□□□□ -1.47
MSH6P52701 RN7SKP141-201ENST00000516167 338 ntBASIC5.9□□□□□ -1.47
MSH6P52701 AC068993.1-201ENST00000546724 589 ntBASIC5.9□□□□□ -1.47
MSH6P52701 MIR3936-201ENST00000584304 110 ntBASIC5.9□□□□□ -1.47
MSH6P52701 LSM1P2-201ENST00000604911 322 ntBASIC5.9□□□□□ -1.47
MSH6P52701 AL138721.1-201ENST00000616756 179 ntBASIC5.9□□□□□ -1.47
MSH6P52701 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC5.9□□□□□ -1.47
MSH6P52701 CASC19-204ENST00000641001 2055 ntBASIC5.9□□□□□ -1.47
MSH6P52701 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
MSH6P52701 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
MSH6P52701 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC5.9□□□□□ -1.47
MSH6P52701 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.89□□□□□ -1.47
MSH6P52701 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSH6P52701 LINC00561-201ENST00000565815 2738 ntBASIC5.89□□□□□ -1.47
MSH6P52701 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC5.89□□□□□ -1.47
MSH6P52701 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSH6P52701 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
MSH6P52701 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSH6P52701 RNA5SP151-201ENST00000365632 117 ntBASIC5.89□□□□□ -1.47
MSH6P52701 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
MSH6P52701 EI24P3-201ENST00000399046 1062 ntBASIC5.89□□□□□ -1.47
MSH6P52701 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
MSH6P52701 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC5.89□□□□□ -1.47
MSH6P52701 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
MSH6P52701 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
MSH6P52701 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC5.89□□□□□ -1.47
MSH6P52701 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC5.89□□□□□ -1.47
MSH6P52701 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC5.89□□□□□ -1.47
MSH6P52701 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC5.89□□□□□ -1.47
MSH6P52701 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSH6P52701 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC5.89□□□□□ -1.47
MSH6P52701 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
MSH6P52701 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSH6P52701 NXPH1-205ENST00000602349 1953 ntBASIC5.88□□□□□ -1.47
MSH6P52701 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSH6P52701 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
MSH6P52701 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
MSH6P52701 OR4A15-201ENST00000314706 1035 ntBASIC5.88□□□□□ -1.47
MSH6P52701 SNORA5A-201ENST00000384111 134 ntBASIC5.88□□□□□ -1.47
MSH6P52701 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
MSH6P52701 HSFY1P1-201ENST00000423928 1178 ntBASIC5.88□□□□□ -1.47
MSH6P52701 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
MSH6P52701 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC5.88□□□□□ -1.47
MSH6P52701 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC5.88□□□□□ -1.47
MSH6P52701 AF213884.1-201ENST00000488102 463 ntBASIC5.88□□□□□ -1.47
MSH6P52701 USP9YP2-201ENST00000504503 1000 ntBASIC5.88□□□□□ -1.47
MSH6P52701 USP9YP1-201ENST00000513521 1002 ntBASIC5.88□□□□□ -1.47
MSH6P52701 AC016550.3-201ENST00000515706 767 ntBASIC5.88□□□□□ -1.47
MSH6P52701 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.88□□□□□ -1.47
MSH6P52701 AC037471.2-201ENST00000564941 598 ntBASIC5.88□□□□□ -1.47
MSH6P52701 AC027455.1-201ENST00000574104 594 ntBASIC5.88□□□□□ -1.47
MSH6P52701 AL592436.1-201ENST00000605135 558 ntBASIC5.88□□□□□ -1.47
MSH6P52701 AL034408.1-202ENST00000636088 415 ntBASIC5.88□□□□□ -1.47
MSH6P52701 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSH6P52701 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC5.88□□□□□ -1.47
MSH6P52701 MAPK10-320ENST00000641462 6696 ntBASIC5.88□□□□□ -1.47
MSH6P52701 AL672167.1-205ENST00000641112 3080 ntBASIC5.87□□□□□ -1.47
MSH6P52701 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
MSH6P52701 NOL8P1-201ENST00000508336 3529 ntBASIC5.87□□□□□ -1.47
MSH6P52701 AL592182.3-201ENST00000642132 3304 ntBASIC5.87□□□□□ -1.47
MSH6P52701 AC006484.1-201ENST00000435086 1884 ntBASIC5.87□□□□□ -1.47
MSH6P52701 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
MSH6P52701 ACEA_U3.1-201ENST00000363057 217 ntBASIC5.87□□□□□ -1.47
MSH6P52701 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
MSH6P52701 RNU1-63P-201ENST00000383902 164 ntBASIC5.87□□□□□ -1.47
MSH6P52701 RNU6-213P-201ENST00000384051 104 ntBASIC5.87□□□□□ -1.47
MSH6P52701 CEACAMP1-201ENST00000434624 1035 ntBASIC5.87□□□□□ -1.47
MSH6P52701 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
MSH6P52701 HPRT1P2-201ENST00000505250 544 ntBASIC5.87□□□□□ -1.47
MSH6P52701 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC5.87□□□□□ -1.47
MSH6P52701 PGBD4P4-201ENST00000509673 613 ntBASIC5.87□□□□□ -1.47
MSH6P52701 GMPSP1-201ENST00000514075 579 ntBASIC5.87□□□□□ -1.47
MSH6P52701 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC5.87□□□□□ -1.47
MSH6P52701 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC5.87□□□□□ -1.47
MSH6P52701 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC5.87□□□□□ -1.47
MSH6P52701 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC5.87□□□□□ -1.47
MSH6P52701 MIR4472-2-201ENST00000582069 67 ntBASIC5.87□□□□□ -1.47
MSH6P52701 AC006363.1-201ENST00000603806 463 ntBASIC5.87□□□□□ -1.47
MSH6P52701 AC008013.2-202ENST00000637965 364 ntBASIC5.87□□□□□ -1.47
MSH6P52701 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
MSH6P52701 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.87□□□□□ -1.47
MSH6P52701 AC008079.2-201ENST00000623543 20396 ntBASIC5.87□□□□□ -1.47
MSH6P52701 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC5.87□□□□□ -1.47
MSH6P52701 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
MSH6P52701 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC5.87□□□□□ -1.47
MSH6P52701 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
MSH6P52701 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.86□□□□□ -1.47
MSH6P52701 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
MSH6P52701 RNA5SP72-201ENST00000364442 117 ntBASIC5.86□□□□□ -1.47
MSH6P52701 RN7SKP156-201ENST00000410308 342 ntBASIC5.86□□□□□ -1.47
MSH6P52701 AL356968.2-201ENST00000412769 1257 ntBASIC5.86□□□□□ -1.47
MSH6P52701 EIF1P3-201ENST00000423841 334 ntBASIC5.86□□□□□ -1.47
MSH6P52701 NPM1P34-201ENST00000428821 893 ntBASIC5.86□□□□□ -1.47
MSH6P52701 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms