Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC019155.1-201ENST00000382242 574 ntBASIC4.31□□□□□ -1.72
SHMT2P34897 ATP5F1P2-201ENST00000398143 760 ntBASIC4.31□□□□□ -1.72
SHMT2P34897 Y_RNA.625-201ENST00000411256 107 ntBASIC4.31□□□□□ -1.72
SHMT2P34897 EIF4A1P3-201ENST00000411521 244 ntBASIC4.31□□□□□ -1.72
SHMT2P34897 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC4.31□□□□□ -1.72
SHMT2P34897 TMSB10P2-201ENST00000416049 131 ntBASIC4.31□□□□□ -1.72
SHMT2P34897 RPL12P34-201ENST00000424532 479 ntBASIC4.31□□□□□ -1.72
SHMT2P34897 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.31□□□□□ -1.72
SHMT2P34897 RPL18P10-201ENST00000425606 538 ntBASIC4.31□□□□□ -1.72
SHMT2P34897 HMGB3P10-201ENST00000434734 572 ntBASIC4.31□□□□□ -1.72
SHMT2P34897 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
SHMT2P34897 AC012158.1-204ENST00000483430 465 ntBASIC4.31□□□□□ -1.72
SHMT2P34897 RN7SL812P-201ENST00000493791 279 ntBASIC4.31□□□□□ -1.72
SHMT2P34897 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.31□□□□□ -1.72
SHMT2P34897 AC093840.1-201ENST00000511599 336 ntBASIC4.31□□□□□ -1.72
SHMT2P34897 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.31□□□□□ -1.72
SHMT2P34897 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC4.31□□□□□ -1.72
SHMT2P34897 AC008694.2-201ENST00000517591 306 ntBASIC4.31□□□□□ -1.72
SHMT2P34897 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC4.31□□□□□ -1.72
SHMT2P34897 AC090151.1-201ENST00000520784 730 ntBASIC4.31□□□□□ -1.72
SHMT2P34897 NPM1P6-201ENST00000521088 871 ntBASIC4.31□□□□□ -1.72
SHMT2P34897 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SHMT2P34897 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.31□□□□□ -1.72
SHMT2P34897 AC069240.1-201ENST00000548774 375 ntBASIC4.31□□□□□ -1.72
SHMT2P34897 MEG8-217ENST00000556637 924 ntTSL 5 BASIC4.31□□□□□ -1.72
SHMT2P34897 CD24P2-201ENST00000565486 219 ntBASIC4.31□□□□□ -1.72
SHMT2P34897 SNORD39.2-201ENST00000579995 76 ntBASIC4.31□□□□□ -1.72
SHMT2P34897 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC4.31□□□□□ -1.72
SHMT2P34897 AF230666.2-201ENST00000602328 725 ntBASIC4.31□□□□□ -1.72
SHMT2P34897 AC015722.2-201ENST00000622210 551 ntBASIC4.31□□□□□ -1.72
SHMT2P34897 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC4.31□□□□□ -1.72
SHMT2P34897 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SHMT2P34897 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.31□□□□□ -1.72
SHMT2P34897 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
SHMT2P34897 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.31□□□□□ -1.72
SHMT2P34897 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.31□□□□□ -1.72
SHMT2P34897 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
SHMT2P34897 AC016588.2-201ENST00000632484 3021 ntBASIC4.3□□□□□ -1.72
SHMT2P34897 MTND4P26-201ENST00000415971 1359 ntBASIC4.3□□□□□ -1.72
SHMT2P34897 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SHMT2P34897 OR5P1P-201ENST00000299512 925 ntBASIC4.3□□□□□ -1.72
SHMT2P34897 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
SHMT2P34897 AC067945.1-201ENST00000342609 618 ntBASIC4.3□□□□□ -1.72
SHMT2P34897 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
SHMT2P34897 MT-RNR1-201ENST00000389680 954 ntBASIC4.3□□□□□ -1.72
SHMT2P34897 MIR3065-201ENST00000390137 79 ntBASIC4.3□□□□□ -1.72
SHMT2P34897 RNU6-564P-201ENST00000410983 104 ntBASIC4.3□□□□□ -1.72
SHMT2P34897 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC4.3□□□□□ -1.72
SHMT2P34897 AJ239321.1-201ENST00000424255 564 ntBASIC4.3□□□□□ -1.72
SHMT2P34897 SKP1P3-201ENST00000429280 487 ntBASIC4.3□□□□□ -1.72
SHMT2P34897 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.3□□□□□ -1.72
SHMT2P34897 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC4.3□□□□□ -1.72
SHMT2P34897 CCRL1P1-201ENST00000449542 1053 ntBASIC4.3□□□□□ -1.72
SHMT2P34897 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC4.3□□□□□ -1.72
SHMT2P34897 DDX39BP2-208ENST00000453923 258 ntBASIC4.3□□□□□ -1.72
SHMT2P34897 RPL23AP24-201ENST00000458203 385 ntBASIC4.3□□□□□ -1.72
SHMT2P34897 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.3□□□□□ -1.72
SHMT2P34897 AC113430.1-201ENST00000506872 718 ntBASIC4.3□□□□□ -1.72
SHMT2P34897 RNA5SP154-201ENST00000516193 111 ntBASIC4.3□□□□□ -1.72
SHMT2P34897 AC034205.1-201ENST00000520621 638 ntBASIC4.3□□□□□ -1.72
SHMT2P34897 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC4.3□□□□□ -1.72
SHMT2P34897 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.3□□□□□ -1.72
SHMT2P34897 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.3□□□□□ -1.72
SHMT2P34897 MIR4277-201ENST00000578298 84 ntBASIC4.3□□□□□ -1.72
SHMT2P34897 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC4.3□□□□□ -1.72
SHMT2P34897 AC090181.2-201ENST00000602975 672 ntBASIC4.3□□□□□ -1.72
SHMT2P34897 AC008638.3-201ENST00000603341 463 ntBASIC4.3□□□□□ -1.72
SHMT2P34897 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.3□□□□□ -1.72
SHMT2P34897 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SHMT2P34897 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SHMT2P34897 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.3□□□□□ -1.72
SHMT2P34897 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.3□□□□□ -1.72
SHMT2P34897 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SHMT2P34897 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.3□□□□□ -1.72
SHMT2P34897 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.29□□□□□ -1.72
SHMT2P34897 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SHMT2P34897 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SHMT2P34897 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SHMT2P34897 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
SHMT2P34897 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.29□□□□□ -1.72
SHMT2P34897 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC4.29□□□□□ -1.72
SHMT2P34897 MIR448-201ENST00000362131 111 ntBASIC4.29□□□□□ -1.72
SHMT2P34897 RNU1-130P-201ENST00000363930 160 ntBASIC4.29□□□□□ -1.72
SHMT2P34897 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
SHMT2P34897 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.29□□□□□ -1.72
SHMT2P34897 MIR93-201ENST00000385024 80 ntBASIC4.29□□□□□ -1.72
SHMT2P34897 MIR513A2-201ENST00000385249 127 ntBASIC4.29□□□□□ -1.72
SHMT2P34897 RNA5SP105-201ENST00000391123 113 ntBASIC4.29□□□□□ -1.72
SHMT2P34897 RPL23AP59-201ENST00000399415 461 ntBASIC4.29□□□□□ -1.72
SHMT2P34897 VN1R8P-201ENST00000407739 893 ntBASIC4.29□□□□□ -1.72
SHMT2P34897 SNRPFP1-201ENST00000414761 252 ntBASIC4.29□□□□□ -1.72
SHMT2P34897 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC4.29□□□□□ -1.72
SHMT2P34897 AL132765.1-201ENST00000434165 553 ntBASIC4.29□□□□□ -1.72
SHMT2P34897 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.29□□□□□ -1.72
SHMT2P34897 AC114495.1-201ENST00000441274 436 ntBASIC4.29□□□□□ -1.72
SHMT2P34897 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
SHMT2P34897 PHBP16-201ENST00000446318 950 ntBASIC4.29□□□□□ -1.72
SHMT2P34897 PTMAP3-201ENST00000447474 330 ntBASIC4.29□□□□□ -1.72
SHMT2P34897 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SHMT2P34897 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms