Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC073335.1-201ENST00000427776 363 ntBASIC3.35□□□□□ -1.87
HLA-DMBP28068 CNOT7P1-201ENST00000429006 852 ntBASIC3.35□□□□□ -1.87
HLA-DMBP28068 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC3.35□□□□□ -1.87
HLA-DMBP28068 YWHAZP2-201ENST00000440317 728 ntBASIC3.35□□□□□ -1.87
HLA-DMBP28068 VN1R96P-201ENST00000446052 858 ntBASIC3.35□□□□□ -1.87
HLA-DMBP28068 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC3.35□□□□□ -1.87
HLA-DMBP28068 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC3.35□□□□□ -1.87
HLA-DMBP28068 MTND2P28-201ENST00000457540 1044 ntBASIC3.35□□□□□ -1.87
HLA-DMBP28068 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC3.35□□□□□ -1.87
HLA-DMBP28068 AC079804.1-201ENST00000461922 436 ntBASIC3.35□□□□□ -1.87
HLA-DMBP28068 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HLA-DMBP28068 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC3.35□□□□□ -1.87
HLA-DMBP28068 PPBPP1-201ENST00000510807 373 ntBASIC3.35□□□□□ -1.87
HLA-DMBP28068 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC3.35□□□□□ -1.87
HLA-DMBP28068 AC018797.3-201ENST00000513388 1241 ntBASIC3.35□□□□□ -1.87
HLA-DMBP28068 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC3.35□□□□□ -1.87
HLA-DMBP28068 VTA1P2-201ENST00000520205 911 ntBASIC3.35□□□□□ -1.87
HLA-DMBP28068 AP001781.1-201ENST00000530977 207 ntBASIC3.35□□□□□ -1.87
HLA-DMBP28068 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC3.35□□□□□ -1.87
HLA-DMBP28068 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC3.35□□□□□ -1.87
HLA-DMBP28068 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC3.35□□□□□ -1.87
HLA-DMBP28068 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC3.35□□□□□ -1.87
HLA-DMBP28068 AC068790.7-201ENST00000602347 528 ntBASIC3.35□□□□□ -1.87
HLA-DMBP28068 AL023583.1-201ENST00000607518 1143 ntBASIC3.35□□□□□ -1.87
HLA-DMBP28068 AC074276.2-201ENST00000619891 348 ntBASIC3.35□□□□□ -1.87
HLA-DMBP28068 AP003400.2-201ENST00000624036 666 ntBASIC3.35□□□□□ -1.87
HLA-DMBP28068 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC3.35□□□□□ -1.87
HLA-DMBP28068 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
HLA-DMBP28068 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HLA-DMBP28068 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC3.35□□□□□ -1.87
HLA-DMBP28068 OR11H5P-202ENST00000641612 1325 ntBASIC3.35□□□□□ -1.87
HLA-DMBP28068 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HLA-DMBP28068 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC3.35□□□□□ -1.87
HLA-DMBP28068 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HLA-DMBP28068 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC3.35□□□□□ -1.87
HLA-DMBP28068 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HLA-DMBP28068 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HLA-DMBP28068 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HLA-DMBP28068 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.34□□□□□ -1.87
HLA-DMBP28068 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
HLA-DMBP28068 AC010329.2-201ENST00000595195 2737 ntBASIC3.34□□□□□ -1.87
HLA-DMBP28068 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.87
HLA-DMBP28068 RNU1-15P-201ENST00000353977 144 ntBASIC3.34□□□□□ -1.87
HLA-DMBP28068 RNA5SP52-201ENST00000362448 134 ntBASIC3.34□□□□□ -1.87
HLA-DMBP28068 RNA5SP307-201ENST00000362863 116 ntBASIC3.34□□□□□ -1.87
HLA-DMBP28068 SNORD113.2-201ENST00000364166 89 ntBASIC3.34□□□□□ -1.87
HLA-DMBP28068 RHOT1P2-201ENST00000366423 333 ntBASIC3.34□□□□□ -1.87
HLA-DMBP28068 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC3.34□□□□□ -1.87
HLA-DMBP28068 MIR3074-201ENST00000384885 81 ntBASIC3.34□□□□□ -1.87
HLA-DMBP28068 MT-RNR1-201ENST00000389680 954 ntBASIC3.34□□□□□ -1.87
HLA-DMBP28068 AC136624.1-201ENST00000400791 413 ntBASIC3.34□□□□□ -1.87
HLA-DMBP28068 AC006065.1-201ENST00000422539 802 ntBASIC3.34□□□□□ -1.87
HLA-DMBP28068 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC3.34□□□□□ -1.87
HLA-DMBP28068 BX119904.1-201ENST00000432026 348 ntBASIC3.34□□□□□ -1.87
HLA-DMBP28068 HLA-N-201ENST00000437516 135 ntBASIC3.34□□□□□ -1.87
HLA-DMBP28068 RPL7P33-201ENST00000444159 742 ntBASIC3.34□□□□□ -1.87
HLA-DMBP28068 AL162591.2-201ENST00000449634 317 ntBASIC3.34□□□□□ -1.87
HLA-DMBP28068 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC3.34□□□□□ -1.87
HLA-DMBP28068 PRELID3BP7-201ENST00000503606 469 ntBASIC3.34□□□□□ -1.87
HLA-DMBP28068 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC3.34□□□□□ -1.87
HLA-DMBP28068 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC3.34□□□□□ -1.87
HLA-DMBP28068 MTHFD2P4-201ENST00000515074 1025 ntBASIC3.34□□□□□ -1.87
HLA-DMBP28068 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC3.34□□□□□ -1.87
HLA-DMBP28068 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC3.34□□□□□ -1.87
HLA-DMBP28068 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC3.34□□□□□ -1.87
HLA-DMBP28068 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC3.34□□□□□ -1.87
HLA-DMBP28068 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC3.34□□□□□ -1.87
HLA-DMBP28068 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC3.34□□□□□ -1.87
HLA-DMBP28068 AC069061.3-201ENST00000582254 823 ntBASIC3.34□□□□□ -1.87
HLA-DMBP28068 AC005034.4-201ENST00000603612 899 ntBASIC3.34□□□□□ -1.87
HLA-DMBP28068 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC3.34□□□□□ -1.87
HLA-DMBP28068 MIR378J-201ENST00000611988 109 ntBASIC3.34□□□□□ -1.87
HLA-DMBP28068 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.34□□□□□ -1.87
HLA-DMBP28068 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC3.34□□□□□ -1.87
HLA-DMBP28068 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
HLA-DMBP28068 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HLA-DMBP28068 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HLA-DMBP28068 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.87
HLA-DMBP28068 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HLA-DMBP28068 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.34□□□□□ -1.88
HLA-DMBP28068 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC3.34□□□□□ -1.88
HLA-DMBP28068 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.88
HLA-DMBP28068 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC3.34□□□□□ -1.88
HLA-DMBP28068 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.88
HLA-DMBP28068 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.34□□□□□ -1.88
HLA-DMBP28068 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC3.33□□□□□ -1.88
HLA-DMBP28068 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HLA-DMBP28068 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
HLA-DMBP28068 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HLA-DMBP28068 AC090971.4-201ENST00000560291 1800 ntBASIC3.33□□□□□ -1.88
HLA-DMBP28068 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
HLA-DMBP28068 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
HLA-DMBP28068 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC3.33□□□□□ -1.88
HLA-DMBP28068 SNORA70F-201ENST00000384142 135 ntBASIC3.33□□□□□ -1.88
HLA-DMBP28068 RNA5SP397-201ENST00000391323 118 ntBASIC3.33□□□□□ -1.88
HLA-DMBP28068 AC096644.3-201ENST00000416788 338 ntBASIC3.33□□□□□ -1.88
HLA-DMBP28068 MAP1LC3BP1-201ENST00000417653 379 ntBASIC3.33□□□□□ -1.88
HLA-DMBP28068 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC3.33□□□□□ -1.88
HLA-DMBP28068 C4BPAP2-201ENST00000428434 478 ntBASIC3.33□□□□□ -1.88
HLA-DMBP28068 NANOGP6-201ENST00000429190 847 ntBASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms