Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC4.69□□□□□ -1.66
MSH3P20585 AC099654.8-201ENST00000637757 681 ntBASIC4.69□□□□□ -1.66
MSH3P20585 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.69□□□□□ -1.66
MSH3P20585 ZFRP1-201ENST00000457579 2970 ntBASIC4.69□□□□□ -1.66
MSH3P20585 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
MSH3P20585 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
MSH3P20585 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.68□□□□□ -1.66
MSH3P20585 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC4.68□□□□□ -1.66
MSH3P20585 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC4.68□□□□□ -1.66
MSH3P20585 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.68□□□□□ -1.66
MSH3P20585 VPS35P1-201ENST00000563400 1518 ntBASIC4.68□□□□□ -1.66
MSH3P20585 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
MSH3P20585 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
MSH3P20585 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
MSH3P20585 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
MSH3P20585 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
MSH3P20585 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
MSH3P20585 MIR298-201ENST00000401212 88 ntBASIC4.68□□□□□ -1.66
MSH3P20585 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.68□□□□□ -1.66
MSH3P20585 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.68□□□□□ -1.66
MSH3P20585 RSU1P3-201ENST00000412878 835 ntBASIC4.68□□□□□ -1.66
MSH3P20585 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC4.68□□□□□ -1.66
MSH3P20585 BX664727.1-201ENST00000416024 466 ntBASIC4.68□□□□□ -1.66
MSH3P20585 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC4.68□□□□□ -1.66
MSH3P20585 AC006065.1-201ENST00000422539 802 ntBASIC4.68□□□□□ -1.66
MSH3P20585 FABP7P1-201ENST00000424004 391 ntBASIC4.68□□□□□ -1.66
MSH3P20585 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC4.68□□□□□ -1.66
MSH3P20585 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.68□□□□□ -1.66
MSH3P20585 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC4.68□□□□□ -1.66
MSH3P20585 AC104651.2-201ENST00000447549 528 ntBASIC4.68□□□□□ -1.66
MSH3P20585 AC006967.1-201ENST00000467608 589 ntBASIC4.68□□□□□ -1.66
MSH3P20585 SYT14P1-201ENST00000481459 721 ntBASIC4.68□□□□□ -1.66
MSH3P20585 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC4.68□□□□□ -1.66
MSH3P20585 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC4.68□□□□□ -1.66
MSH3P20585 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.68□□□□□ -1.66
MSH3P20585 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC4.68□□□□□ -1.66
MSH3P20585 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC4.68□□□□□ -1.66
MSH3P20585 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
MSH3P20585 YWHAZP1-201ENST00000556286 722 ntBASIC4.68□□□□□ -1.66
MSH3P20585 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.68□□□□□ -1.66
MSH3P20585 CD24P2-201ENST00000565486 219 ntBASIC4.68□□□□□ -1.66
MSH3P20585 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC4.68□□□□□ -1.66
MSH3P20585 RN7SL652P-201ENST00000577769 300 ntBASIC4.68□□□□□ -1.66
MSH3P20585 MIR4270-201ENST00000581799 70 ntBASIC4.68□□□□□ -1.66
MSH3P20585 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC4.68□□□□□ -1.66
MSH3P20585 AC008536.1-201ENST00000602872 669 ntBASIC4.68□□□□□ -1.66
MSH3P20585 AC098935.2-201ENST00000604222 466 ntBASIC4.68□□□□□ -1.66
MSH3P20585 BX323046.1-201ENST00000610145 535 ntBASIC4.68□□□□□ -1.66
MSH3P20585 NAA60-237ENST00000615865 326 ntTSL 5 BASIC4.68□□□□□ -1.66
MSH3P20585 AC007275.1-201ENST00000621243 671 ntBASIC4.68□□□□□ -1.66
MSH3P20585 AC015804.1-201ENST00000622935 435 ntBASIC4.68□□□□□ -1.66
MSH3P20585 RPL23AP61-201ENST00000623642 466 ntBASIC4.68□□□□□ -1.66
MSH3P20585 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
MSH3P20585 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC4.68□□□□□ -1.66
MSH3P20585 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.68□□□□□ -1.66
MSH3P20585 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.68□□□□□ -1.66
MSH3P20585 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
MSH3P20585 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
MSH3P20585 AL645568.2-201ENST00000432815 1337 ntBASIC4.68□□□□□ -1.66
MSH3P20585 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.68□□□□□ -1.66
MSH3P20585 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.68□□□□□ -1.66
MSH3P20585 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
MSH3P20585 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
MSH3P20585 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.67□□□□□ -1.66
MSH3P20585 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
MSH3P20585 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.67□□□□□ -1.66
MSH3P20585 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
MSH3P20585 Z95327.2-201ENST00000414579 1873 ntBASIC4.67□□□□□ -1.66
MSH3P20585 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
MSH3P20585 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
MSH3P20585 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
MSH3P20585 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
MSH3P20585 RNU1-83P-201ENST00000363426 164 ntBASIC4.67□□□□□ -1.66
MSH3P20585 RN7SKP224-201ENST00000364140 325 ntBASIC4.67□□□□□ -1.66
MSH3P20585 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC4.67□□□□□ -1.66
MSH3P20585 MT-TP-201ENST00000387461 68 ntBASIC4.67□□□□□ -1.66
MSH3P20585 AL590762.2-201ENST00000395798 571 ntBASIC4.67□□□□□ -1.66
MSH3P20585 RN7SKP267-201ENST00000410381 285 ntBASIC4.67□□□□□ -1.66
MSH3P20585 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC4.67□□□□□ -1.66
MSH3P20585 AL358176.3-201ENST00000420757 454 ntBASIC4.67□□□□□ -1.66
MSH3P20585 SLC9B1P4-201ENST00000421957 1288 ntBASIC4.67□□□□□ -1.66
MSH3P20585 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC4.67□□□□□ -1.66
MSH3P20585 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC4.67□□□□□ -1.66
MSH3P20585 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC4.67□□□□□ -1.66
MSH3P20585 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC4.67□□□□□ -1.66
MSH3P20585 AL606517.1-201ENST00000446914 387 ntBASIC4.67□□□□□ -1.66
MSH3P20585 H2AFZP5-201ENST00000446960 382 ntBASIC4.67□□□□□ -1.66
MSH3P20585 AL157827.1-201ENST00000447622 132 ntBASIC4.67□□□□□ -1.66
MSH3P20585 NPM1P39-201ENST00000449818 867 ntBASIC4.67□□□□□ -1.66
MSH3P20585 RPL7P55-201ENST00000450522 746 ntBASIC4.67□□□□□ -1.66
MSH3P20585 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.67□□□□□ -1.66
MSH3P20585 AC008379.1-201ENST00000463655 464 ntBASIC4.67□□□□□ -1.66
MSH3P20585 AC090142.1-201ENST00000465776 462 ntBASIC4.67□□□□□ -1.66
MSH3P20585 CYCSP20-201ENST00000473154 315 ntBASIC4.67□□□□□ -1.66
MSH3P20585 AC108729.1-201ENST00000487812 947 ntBASIC4.67□□□□□ -1.66
MSH3P20585 AC011005.3-201ENST00000491624 395 ntBASIC4.67□□□□□ -1.66
MSH3P20585 PPM1AP1-201ENST00000502740 1135 ntBASIC4.67□□□□□ -1.66
MSH3P20585 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC4.67□□□□□ -1.66
MSH3P20585 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC4.67□□□□□ -1.66
MSH3P20585 RNU2-30P-201ENST00000516209 141 ntBASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms