Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC096644.3-201ENST00000416788 338 ntBASIC4.12□□□□□ -1.75
VCANP13611 CKS1BP6-201ENST00000424932 240 ntBASIC4.12□□□□□ -1.75
VCANP13611 FTH1P1-201ENST00000437933 532 ntBASIC4.12□□□□□ -1.75
VCANP13611 MTND1P6-201ENST00000523621 946 ntBASIC4.12□□□□□ -1.75
VCANP13611 AC091544.4-201ENST00000555268 342 ntBASIC4.12□□□□□ -1.75
VCANP13611 CYCSP40-201ENST00000575927 294 ntBASIC4.12□□□□□ -1.75
VCANP13611 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.12□□□□□ -1.75
VCANP13611 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.12□□□□□ -1.75
VCANP13611 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.12□□□□□ -1.75
VCANP13611 ZNF43-205ENST00000594012 5584 ntAPPRIS ALT2 TSL 2 BASIC4.12□□□□□ -1.75
VCANP13611 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
VCANP13611 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC4.12□□□□□ -1.75
VCANP13611 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
VCANP13611 SLC35E3-202ENST00000398004 17791 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
VCANP13611 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
VCANP13611 TCEA1P2-201ENST00000420496 906 ntBASIC4.12□□□□□ -1.75
VCANP13611 AC073063.1-201ENST00000434352 607 ntBASIC4.12□□□□□ -1.75
VCANP13611 OR52E3P-201ENST00000452083 936 ntBASIC4.12□□□□□ -1.75
VCANP13611 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
VCANP13611 RERGL-202ENST00000536890 367 ntTSL 3 BASIC4.12□□□□□ -1.75
VCANP13611 CR383656.14-201ENST00000551951 406 ntBASIC4.12□□□□□ -1.75
VCANP13611 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC4.12□□□□□ -1.75
VCANP13611 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4.12□□□□□ -1.75
VCANP13611 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
VCANP13611 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
VCANP13611 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
VCANP13611 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
VCANP13611 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.12□□□□□ -1.75
VCANP13611 IL16-204ENST00000394660 9616 ntAPPRIS ALT2 TSL 2 BASIC4.11□□□□□ -1.75
VCANP13611 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VCANP13611 RN7SKP167-201ENST00000411047 285 ntBASIC4.11□□□□□ -1.75
VCANP13611 UBE2V1P1-201ENST00000430836 445 ntBASIC4.11□□□□□ -1.75
VCANP13611 AC006011.1-201ENST00000442758 349 ntBASIC4.11□□□□□ -1.75
VCANP13611 AC132942.1-201ENST00000486753 483 ntBASIC4.11□□□□□ -1.75
VCANP13611 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.11□□□□□ -1.75
VCANP13611 MIR5680-201ENST00000577577 84 ntBASIC4.11□□□□□ -1.75
VCANP13611 Z98200.1-201ENST00000607298 470 ntBASIC4.11□□□□□ -1.75
VCANP13611 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.11□□□□□ -1.75
VCANP13611 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VCANP13611 EMX2OS-206ENST00000551288 7280 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VCANP13611 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VCANP13611 AC073073.2-201ENST00000609827 2578 ntBASIC4.11□□□□□ -1.75
VCANP13611 AP000542.2-201ENST00000623199 6179 ntBASIC4.11□□□□□ -1.75
VCANP13611 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VCANP13611 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC4.11□□□□□ -1.75
VCANP13611 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VCANP13611 TAF9BP1-201ENST00000396646 746 ntBASIC4.11□□□□□ -1.75
VCANP13611 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.11□□□□□ -1.75
VCANP13611 AC080014.1-201ENST00000496877 1201 ntBASIC4.11□□□□□ -1.75
VCANP13611 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VCANP13611 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC4.11□□□□□ -1.75
VCANP13611 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC4.11□□□□□ -1.75
VCANP13611 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.11□□□□□ -1.75
VCANP13611 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.11□□□□□ -1.75
VCANP13611 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
VCANP13611 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VCANP13611 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.11□□□□□ -1.75
VCANP13611 KCNN3-201ENST00000271915 13033 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VCANP13611 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.11□□□□□ -1.75
VCANP13611 RPA3-203ENST00000401447 414 ntTSL 3 BASIC4.11□□□□□ -1.75
VCANP13611 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VCANP13611 AC010342.1-201ENST00000514047 877 ntBASIC4.11□□□□□ -1.75
VCANP13611 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC4.11□□□□□ -1.75
VCANP13611 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VCANP13611 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VCANP13611 SNX18P3-202ENST00000565670 1750 ntBASIC4.11□□□□□ -1.75
VCANP13611 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
VCANP13611 AC093849.1-201ENST00000563631 2209 ntBASIC4.1□□□□□ -1.75
VCANP13611 AC139426.3-201ENST00000605648 2059 ntBASIC4.1□□□□□ -1.75
VCANP13611 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.1□□□□□ -1.75
VCANP13611 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC4.1□□□□□ -1.75
VCANP13611 HNRNPA1P54-201ENST00000411857 9714 ntBASIC4.1□□□□□ -1.75
VCANP13611 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
VCANP13611 SNORA48.8-201ENST00000391324 134 ntBASIC4.1□□□□□ -1.75
VCANP13611 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC4.1□□□□□ -1.75
VCANP13611 AC010374.1-201ENST00000503762 1237 ntBASIC4.1□□□□□ -1.75
VCANP13611 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC4.1□□□□□ -1.75
VCANP13611 NCAPGP2-201ENST00000557911 754 ntBASIC4.1□□□□□ -1.75
VCANP13611 AC007066.2-202ENST00000566531 914 ntBASIC4.1□□□□□ -1.75
VCANP13611 AC008833.1-201ENST00000611633 691 ntBASIC4.1□□□□□ -1.75
VCANP13611 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC4.1□□□□□ -1.75
VCANP13611 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC4.1□□□□□ -1.75
VCANP13611 AC005183.1-201ENST00000603687 1979 ntBASIC4.1□□□□□ -1.75
VCANP13611 TEK-205ENST00000615002 4666 ntTSL 5 BASIC4.1□□□□□ -1.75
VCANP13611 LINC01109-201ENST00000603837 3081 ntBASIC4.1□□□□□ -1.75
VCANP13611 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VCANP13611 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
VCANP13611 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
VCANP13611 TRBV24OR9-2-201ENST00000416632 435 ntBASIC4.1□□□□□ -1.75
VCANP13611 RNU1-41P-201ENST00000516161 162 ntBASIC4.1□□□□□ -1.75
VCANP13611 RNU1-48P-201ENST00000516400 162 ntBASIC4.1□□□□□ -1.75
VCANP13611 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC4.1□□□□□ -1.75
VCANP13611 AC068254.2-201ENST00000623938 3577 ntBASIC4.1□□□□□ -1.75
VCANP13611 NBPF8-201ENST00000583271 5330 ntBASIC4.1□□□□□ -1.75
VCANP13611 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC4.1□□□□□ -1.75
VCANP13611 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC4.1□□□□□ -1.75
VCANP13611 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VCANP13611 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VCANP13611 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
VCANP13611 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 120.4 ms