Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
SKA3Q8IX90 CCNB2P1-201ENST00000399411 1150 ntBASIC4.07□□□□□ -1.76
SKA3Q8IX90 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.07□□□□□ -1.76
SKA3Q8IX90 RPL26P37-201ENST00000411983 438 ntBASIC4.07□□□□□ -1.76
SKA3Q8IX90 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC4.07□□□□□ -1.76
SKA3Q8IX90 AL590806.1-201ENST00000415818 853 ntBASIC4.07□□□□□ -1.76
SKA3Q8IX90 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC4.07□□□□□ -1.76
SKA3Q8IX90 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC4.07□□□□□ -1.76
SKA3Q8IX90 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC4.07□□□□□ -1.76
SKA3Q8IX90 AP000936.3-201ENST00000438127 255 ntBASIC4.07□□□□□ -1.76
SKA3Q8IX90 AL357520.1-201ENST00000441557 453 ntBASIC4.07□□□□□ -1.76
SKA3Q8IX90 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC4.07□□□□□ -1.76
SKA3Q8IX90 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.07□□□□□ -1.76
SKA3Q8IX90 CALM1P2-201ENST00000452941 448 ntBASIC4.07□□□□□ -1.76
SKA3Q8IX90 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.07□□□□□ -1.76
SKA3Q8IX90 AC104763.1-201ENST00000475274 360 ntBASIC4.07□□□□□ -1.76
SKA3Q8IX90 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.07□□□□□ -1.76
SKA3Q8IX90 AC021087.2-201ENST00000504656 1203 ntBASIC4.07□□□□□ -1.76
SKA3Q8IX90 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC4.07□□□□□ -1.76
SKA3Q8IX90 AC098799.3-201ENST00000506095 438 ntBASIC4.07□□□□□ -1.76
SKA3Q8IX90 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.07□□□□□ -1.76
SKA3Q8IX90 PGBD4P4-201ENST00000509673 613 ntBASIC4.07□□□□□ -1.76
SKA3Q8IX90 RNU6-889P-201ENST00000517189 103 ntBASIC4.07□□□□□ -1.76
SKA3Q8IX90 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC4.07□□□□□ -1.76
SKA3Q8IX90 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC4.07□□□□□ -1.76
SKA3Q8IX90 AC087272.1-201ENST00000523624 533 ntBASIC4.07□□□□□ -1.76
SKA3Q8IX90 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC4.07□□□□□ -1.76
SKA3Q8IX90 OR5M2P-201ENST00000529003 936 ntBASIC4.07□□□□□ -1.76
SKA3Q8IX90 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC4.07□□□□□ -1.76
SKA3Q8IX90 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.07□□□□□ -1.76
SKA3Q8IX90 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.07□□□□□ -1.76
SKA3Q8IX90 AC079075.1-201ENST00000559543 878 ntBASIC4.07□□□□□ -1.76
SKA3Q8IX90 SULT1C2P2-201ENST00000562517 294 ntBASIC4.07□□□□□ -1.76
SKA3Q8IX90 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.07□□□□□ -1.76
SKA3Q8IX90 AC090312.1-201ENST00000580637 348 ntBASIC4.07□□□□□ -1.76
SKA3Q8IX90 MIR4443-201ENST00000585052 53 ntBASIC4.07□□□□□ -1.76
SKA3Q8IX90 SLC25A36P1-201ENST00000590111 465 ntBASIC4.07□□□□□ -1.76
SKA3Q8IX90 AC084373.1-201ENST00000603311 235 ntBASIC4.07□□□□□ -1.76
SKA3Q8IX90 COX6CP4-201ENST00000605798 228 ntBASIC4.07□□□□□ -1.76
SKA3Q8IX90 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
SKA3Q8IX90 AC021106.3-201ENST00000623925 531 ntBASIC4.07□□□□□ -1.76
SKA3Q8IX90 U3.53-201ENST00000628922 216 ntBASIC4.07□□□□□ -1.76
SKA3Q8IX90 AL163152.1-201ENST00000642001 374 ntBASIC4.07□□□□□ -1.76
SKA3Q8IX90 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
SKA3Q8IX90 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SKA3Q8IX90 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SKA3Q8IX90 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.07□□□□□ -1.76
SKA3Q8IX90 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.07□□□□□ -1.76
SKA3Q8IX90 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
SKA3Q8IX90 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
SKA3Q8IX90 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
SKA3Q8IX90 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
SKA3Q8IX90 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
SKA3Q8IX90 RNU6-984P-201ENST00000363236 109 ntBASIC4.06□□□□□ -1.76
SKA3Q8IX90 RHOT1P2-201ENST00000366423 333 ntBASIC4.06□□□□□ -1.76
SKA3Q8IX90 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
SKA3Q8IX90 RNU6-40P-201ENST00000384254 107 ntBASIC4.06□□□□□ -1.76
SKA3Q8IX90 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 Z98745.1-201ENST00000402553 494 ntBASIC4.06□□□□□ -1.76
SKA3Q8IX90 MAST4-207ENST00000407621 559 ntTSL 2 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 RN7SKP106-201ENST00000410832 272 ntBASIC4.06□□□□□ -1.76
SKA3Q8IX90 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
SKA3Q8IX90 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 AC010326.1-201ENST00000462726 602 ntBASIC4.06□□□□□ -1.76
SKA3Q8IX90 RPL12P20-201ENST00000475538 479 ntBASIC4.06□□□□□ -1.76
SKA3Q8IX90 AC037198.2-201ENST00000478845 733 ntBASIC4.06□□□□□ -1.76
SKA3Q8IX90 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 AC093770.1-201ENST00000511559 571 ntBASIC4.06□□□□□ -1.76
SKA3Q8IX90 snoU109.6-201ENST00000516831 118 ntBASIC4.06□□□□□ -1.76
SKA3Q8IX90 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 IGKV1-32-201ENST00000519290 311 ntBASIC4.06□□□□□ -1.76
SKA3Q8IX90 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 AL731537.2-201ENST00000561565 951 ntBASIC4.06□□□□□ -1.76
SKA3Q8IX90 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 AC015912.2-201ENST00000571053 181 ntBASIC4.06□□□□□ -1.76
SKA3Q8IX90 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 IGKV1OR2-9-201ENST00000603957 287 ntBASIC4.06□□□□□ -1.76
SKA3Q8IX90 IGKV1OR2-11-201ENST00000604120 287 ntBASIC4.06□□□□□ -1.76
SKA3Q8IX90 AL021368.1-201ENST00000607490 540 ntBASIC4.06□□□□□ -1.76
SKA3Q8IX90 AC020634.1-201ENST00000608701 549 ntBASIC4.06□□□□□ -1.76
SKA3Q8IX90 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.06□□□□□ -1.76
SKA3Q8IX90 RPL23AP61-201ENST00000623642 466 ntBASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms