Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC3.28□□□□□ -1.88
VPS13CQ709C8 AL158156.1-201ENST00000422509 473 ntBASIC3.28□□□□□ -1.88
VPS13CQ709C8 AL512649.1-201ENST00000428997 581 ntBASIC3.28□□□□□ -1.88
VPS13CQ709C8 AL591503.2-201ENST00000442314 1005 ntBASIC3.28□□□□□ -1.88
VPS13CQ709C8 RN7SL601P-201ENST00000471221 293 ntBASIC3.28□□□□□ -1.88
VPS13CQ709C8 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC3.28□□□□□ -1.88
VPS13CQ709C8 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS13CQ709C8 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS13CQ709C8 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS13CQ709C8 BNIP3P10-201ENST00000605360 577 ntBASIC3.28□□□□□ -1.88
VPS13CQ709C8 AL359757.2-201ENST00000624309 274 ntBASIC3.28□□□□□ -1.88
VPS13CQ709C8 EMX2OS-206ENST00000551288 7280 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
VPS13CQ709C8 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
VPS13CQ709C8 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC3.28□□□□□ -1.88
VPS13CQ709C8 AC107398.3-201ENST00000562284 7000 ntBASIC3.28□□□□□ -1.88
VPS13CQ709C8 FAM186A-201ENST00000327337 7127 ntAPPRIS P2 TSL 5 BASIC3.28□□□□□ -1.88
VPS13CQ709C8 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC3.28□□□□□ -1.88
VPS13CQ709C8 ADGRL3-205ENST00000506746 4935 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
VPS13CQ709C8 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
VPS13CQ709C8 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
VPS13CQ709C8 ATP5A1P2-201ENST00000412323 255 ntBASIC3.28□□□□□ -1.88
VPS13CQ709C8 AC098799.1-201ENST00000504752 800 ntBASIC3.28□□□□□ -1.88
VPS13CQ709C8 OSBPL9P2-201ENST00000526582 1228 ntBASIC3.28□□□□□ -1.88
VPS13CQ709C8 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC3.28□□□□□ -1.88
VPS13CQ709C8 AC007458.1-201ENST00000542812 373 ntBASIC3.28□□□□□ -1.88
VPS13CQ709C8 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS13CQ709C8 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC3.28□□□□□ -1.89
VPS13CQ709C8 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.28□□□□□ -1.89
VPS13CQ709C8 SOD2P1-201ENST00000396543 562 ntBASIC3.27□□□□□ -1.89
VPS13CQ709C8 CYCSP4-201ENST00000429682 331 ntBASIC3.27□□□□□ -1.89
VPS13CQ709C8 RPL23AP46-201ENST00000438548 490 ntBASIC3.27□□□□□ -1.89
VPS13CQ709C8 AL136126.1-201ENST00000473603 402 ntBASIC3.27□□□□□ -1.89
VPS13CQ709C8 MIR5680-201ENST00000577577 84 ntBASIC3.27□□□□□ -1.89
VPS13CQ709C8 CCAT2-201ENST00000630920 1752 ntBASIC3.27□□□□□ -1.89
VPS13CQ709C8 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC3.27□□□□□ -1.89
VPS13CQ709C8 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC3.27□□□□□ -1.89
VPS13CQ709C8 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
VPS13CQ709C8 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
VPS13CQ709C8 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
VPS13CQ709C8 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
VPS13CQ709C8 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS13CQ709C8 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.27□□□□□ -1.89
VPS13CQ709C8 RPS4XP10-201ENST00000465034 731 ntBASIC3.27□□□□□ -1.89
VPS13CQ709C8 RPS4XP18-201ENST00000495480 763 ntBASIC3.27□□□□□ -1.89
VPS13CQ709C8 Y_RNA.673-201ENST00000516306 88 ntBASIC3.27□□□□□ -1.89
VPS13CQ709C8 DEFB109D-201ENST00000529497 240 ntBASIC3.27□□□□□ -1.89
VPS13CQ709C8 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC3.27□□□□□ -1.89
VPS13CQ709C8 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.27□□□□□ -1.89
VPS13CQ709C8 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
VPS13CQ709C8 ADAMTS6-203ENST00000381055 7311 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
VPS13CQ709C8 AC000374.1-201ENST00000434698 1745 ntBASIC3.27□□□□□ -1.89
VPS13CQ709C8 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
VPS13CQ709C8 ZNF426-201ENST00000253115 7085 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
VPS13CQ709C8 MAPK10-372ENST00000641954 3413 ntBASIC3.27□□□□□ -1.89
VPS13CQ709C8 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC3.27□□□□□ -1.89
VPS13CQ709C8 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS13CQ709C8 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
VPS13CQ709C8 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
VPS13CQ709C8 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
VPS13CQ709C8 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
VPS13CQ709C8 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS13CQ709C8 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS13CQ709C8 TRPS1-203ENST00000395715 9990 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS13CQ709C8 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
VPS13CQ709C8 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.26□□□□□ -1.89
VPS13CQ709C8 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS13CQ709C8 MTND4LP20-201ENST00000402379 270 ntBASIC3.26□□□□□ -1.89
VPS13CQ709C8 NMNAT1P2-201ENST00000435192 860 ntBASIC3.26□□□□□ -1.89
VPS13CQ709C8 AP001486.1-201ENST00000463339 476 ntBASIC3.26□□□□□ -1.89
VPS13CQ709C8 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS13CQ709C8 KIAA1024-201ENST00000305428 6732 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS13CQ709C8 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC3.26□□□□□ -1.89
VPS13CQ709C8 C14orf166-201ENST00000261700 7075 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS13CQ709C8 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
VPS13CQ709C8 ZEB2-234ENST00000636413 8984 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS13CQ709C8 PCDH15-230ENST00000617051 7048 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS13CQ709C8 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS13CQ709C8 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
VPS13CQ709C8 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS13CQ709C8 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
VPS13CQ709C8 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS13CQ709C8 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS13CQ709C8 RNA5SP399-201ENST00000364003 117 ntBASIC3.26□□□□□ -1.89
VPS13CQ709C8 U3.26-201ENST00000391236 204 ntBASIC3.26□□□□□ -1.89
VPS13CQ709C8 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.26□□□□□ -1.89
VPS13CQ709C8 AC092641.1-201ENST00000440229 772 ntBASIC3.26□□□□□ -1.89
VPS13CQ709C8 RPL21P8-201ENST00000465083 535 ntBASIC3.26□□□□□ -1.89
VPS13CQ709C8 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS13CQ709C8 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS13CQ709C8 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS13CQ709C8 AC037471.2-201ENST00000564941 598 ntBASIC3.26□□□□□ -1.89
VPS13CQ709C8 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS13CQ709C8 SPATA31D5P-201ENST00000376459 4784 ntBASIC3.26□□□□□ -1.89
VPS13CQ709C8 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
VPS13CQ709C8 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS13CQ709C8 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
VPS13CQ709C8 ITSN2-202ENST00000361999 5814 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS13CQ709C8 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
VPS13CQ709C8 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS13CQ709C8 HSFY4P-201ENST00000415994 1181 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms