Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 AC069431.2-201ENST00000604149 1099 ntBASIC4.93□□□□□ -1.62
COL28A1Q2UY09 AC093673.2-201ENST00000609674 331 ntBASIC4.93□□□□□ -1.62
COL28A1Q2UY09 AC096586.1-201ENST00000610267 561 ntBASIC4.93□□□□□ -1.62
COL28A1Q2UY09 AL121890.3-201ENST00000618494 516 ntBASIC4.93□□□□□ -1.62
COL28A1Q2UY09 AL669942.2-201ENST00000620352 697 ntBASIC4.93□□□□□ -1.62
COL28A1Q2UY09 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL28A1Q2UY09 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 SEC63P2-201ENST00000503863 1939 ntBASIC4.92□□□□□ -1.62
COL28A1Q2UY09 SNORA62.2-201ENST00000364672 152 ntBASIC4.92□□□□□ -1.62
COL28A1Q2UY09 SNORA37-201ENST00000384504 129 ntBASIC4.92□□□□□ -1.62
COL28A1Q2UY09 AC025750.1-201ENST00000399891 379 ntBASIC4.92□□□□□ -1.62
COL28A1Q2UY09 DBIP1-201ENST00000401435 260 ntBASIC4.92□□□□□ -1.62
COL28A1Q2UY09 RNU6-584P-201ENST00000410350 95 ntBASIC4.92□□□□□ -1.62
COL28A1Q2UY09 RN7SKP263-201ENST00000411194 309 ntBASIC4.92□□□□□ -1.62
COL28A1Q2UY09 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 DDX39BP1-205ENST00000422507 192 ntBASIC4.92□□□□□ -1.62
COL28A1Q2UY09 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 AC006946.1-201ENST00000429106 328 ntBASIC4.92□□□□□ -1.62
COL28A1Q2UY09 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 FTH1P16-201ENST00000435241 552 ntBASIC4.92□□□□□ -1.62
COL28A1Q2UY09 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.92□□□□□ -1.62
COL28A1Q2UY09 OR52J1P-201ENST00000450596 932 ntBASIC4.92□□□□□ -1.62
COL28A1Q2UY09 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 AC008280.2-201ENST00000455473 307 ntBASIC4.92□□□□□ -1.62
COL28A1Q2UY09 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 RPL21P6-201ENST00000479171 504 ntBASIC4.92□□□□□ -1.62
COL28A1Q2UY09 RPL7AP10-201ENST00000481016 791 ntBASIC4.92□□□□□ -1.62
COL28A1Q2UY09 RPL7P40-201ENST00000481703 745 ntBASIC4.92□□□□□ -1.62
COL28A1Q2UY09 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 GTF2IP9-201ENST00000502460 301 ntBASIC4.92□□□□□ -1.62
COL28A1Q2UY09 PRELID3BP6-201ENST00000503839 571 ntBASIC4.92□□□□□ -1.62
COL28A1Q2UY09 SUMO2P5-201ENST00000506790 245 ntBASIC4.92□□□□□ -1.62
COL28A1Q2UY09 AC098976.1-201ENST00000513014 541 ntBASIC4.92□□□□□ -1.62
COL28A1Q2UY09 AP002812.4-201ENST00000532139 286 ntBASIC4.92□□□□□ -1.62
COL28A1Q2UY09 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 AC027449.1-201ENST00000608890 407 ntBASIC4.92□□□□□ -1.62
COL28A1Q2UY09 AL627230.1-201ENST00000613077 211 ntBASIC4.92□□□□□ -1.62
COL28A1Q2UY09 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 AL591926.8-201ENST00000616876 211 ntBASIC4.92□□□□□ -1.62
COL28A1Q2UY09 STMN1P1-201ENST00000617809 440 ntBASIC4.92□□□□□ -1.62
COL28A1Q2UY09 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 AP003497.2-201ENST00000624220 967 ntBASIC4.92□□□□□ -1.62
COL28A1Q2UY09 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
COL28A1Q2UY09 AC000374.1-201ENST00000434698 1745 ntBASIC4.92□□□□□ -1.62
COL28A1Q2UY09 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 AC010329.2-201ENST00000595195 2737 ntBASIC4.91□□□□□ -1.62
COL28A1Q2UY09 MAPK10-263ENST00000641052 4307 ntBASIC4.91□□□□□ -1.62
COL28A1Q2UY09 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 AP000568.1-201ENST00000282964 442 ntBASIC4.91□□□□□ -1.62
COL28A1Q2UY09 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 RNU6-249P-201ENST00000363016 102 ntBASIC4.91□□□□□ -1.62
COL28A1Q2UY09 RNU6-298P-201ENST00000390888 96 ntBASIC4.91□□□□□ -1.62
COL28A1Q2UY09 U3.22-201ENST00000391120 215 ntBASIC4.91□□□□□ -1.62
COL28A1Q2UY09 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 HSPA8P15-201ENST00000401676 786 ntBASIC4.91□□□□□ -1.62
COL28A1Q2UY09 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 RPL7P29-201ENST00000437151 728 ntBASIC4.91□□□□□ -1.62
COL28A1Q2UY09 MED6P1-201ENST00000439659 713 ntBASIC4.91□□□□□ -1.62
COL28A1Q2UY09 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 AL606517.1-201ENST00000446914 387 ntBASIC4.91□□□□□ -1.62
COL28A1Q2UY09 SEPT14P24-201ENST00000447236 180 ntBASIC4.91□□□□□ -1.62
COL28A1Q2UY09 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.91□□□□□ -1.62
COL28A1Q2UY09 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms