Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
SOX4Q06945 AC011504.1-201ENST00000623331 4103 ntBASIC6.43□□□□□ -1.38
SOX4Q06945 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
SOX4Q06945 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SOX4Q06945 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SOX4Q06945 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC6.42□□□□□ -1.38
SOX4Q06945 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
SOX4Q06945 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC6.42□□□□□ -1.38
SOX4Q06945 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SOX4Q06945 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
SOX4Q06945 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SOX4Q06945 AC117529.2-201ENST00000512159 2068 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SOX4Q06945 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
SOX4Q06945 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
SOX4Q06945 RN7SKP128-201ENST00000364270 303 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC6.42□□□□□ -1.38
SOX4Q06945 RNU6-452P-201ENST00000384406 107 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 Y_RNA.529-201ENST00000384586 119 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 Y_RNA.548-201ENST00000384656 105 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 RNU6-316P-201ENST00000391027 107 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 GSTA9P-201ENST00000406231 611 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 MIR1302-11-201ENST00000408051 138 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 MIR1302-9-201ENST00000408365 138 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 MIR1302-10-201ENST00000408734 138 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 AC068533.2-201ENST00000411872 306 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
SOX4Q06945 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC6.42□□□□□ -1.38
SOX4Q06945 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC6.42□□□□□ -1.38
SOX4Q06945 MTCO1P20-201ENST00000425366 358 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC6.42□□□□□ -1.38
SOX4Q06945 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC6.42□□□□□ -1.38
SOX4Q06945 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC6.42□□□□□ -1.38
SOX4Q06945 AL445928.1-201ENST00000435545 222 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC6.42□□□□□ -1.38
SOX4Q06945 NIPA2P2-201ENST00000496376 1083 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 AC104109.1-201ENST00000498563 436 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC6.42□□□□□ -1.38
SOX4Q06945 AC008945.1-201ENST00000505144 499 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 AC011352.3-201ENST00000505162 593 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 OR5M14P-201ENST00000506803 618 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC6.42□□□□□ -1.38
SOX4Q06945 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC6.42□□□□□ -1.38
SOX4Q06945 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC6.42□□□□□ -1.38
SOX4Q06945 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC6.42□□□□□ -1.38
SOX4Q06945 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC6.42□□□□□ -1.38
SOX4Q06945 IGLV3-30-201ENST00000524362 298 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC6.42□□□□□ -1.38
SOX4Q06945 AL157687.1-201ENST00000554853 619 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 AC007494.1-201ENST00000562293 760 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC6.42□□□□□ -1.38
SOX4Q06945 MIR4637-201ENST00000582405 84 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 COX6CP7-201ENST00000597056 208 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 BNIP3P8-201ENST00000597863 560 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 YWHAQP7-201ENST00000603536 658 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 AC020910.2-201ENST00000603635 610 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC6.42□□□□□ -1.38
SOX4Q06945 MIR1302-2-201ENST00000607096 138 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 AL442067.2-201ENST00000614033 363 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC6.42□□□□□ -1.38
SOX4Q06945 BANCR-201ENST00000624238 473 ntTSL 2 BASIC6.42□□□□□ -1.38
SOX4Q06945 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC6.42□□□□□ -1.38
SOX4Q06945 CRYM-AS1-204ENST00000637983 556 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SOX4Q06945 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
SOX4Q06945 AC006600.2-201ENST00000624834 2506 ntBASIC6.42□□□□□ -1.38
SOX4Q06945 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC6.42□□□□□ -1.38
SOX4Q06945 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
SOX4Q06945 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC6.42□□□□□ -1.38
SOX4Q06945 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
SOX4Q06945 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
SOX4Q06945 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SOX4Q06945 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
SOX4Q06945 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC6.41□□□□□ -1.38
SOX4Q06945 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC6.41□□□□□ -1.38
SOX4Q06945 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC6.41□□□□□ -1.38
SOX4Q06945 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SOX4Q06945 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC6.41□□□□□ -1.38
SOX4Q06945 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC6.41□□□□□ -1.38
SOX4Q06945 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC6.41□□□□□ -1.38
SOX4Q06945 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
SOX4Q06945 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC6.41□□□□□ -1.38
SOX4Q06945 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC6.41□□□□□ -1.38
SOX4Q06945 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SOX4Q06945 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SOX4Q06945 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
SOX4Q06945 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
SOX4Q06945 AC092642.1-201ENST00000392417 425 ntBASIC6.41□□□□□ -1.38
SOX4Q06945 OR7E101P-201ENST00000400428 513 ntBASIC6.41□□□□□ -1.38
SOX4Q06945 AL356776.1-201ENST00000406574 447 ntBASIC6.41□□□□□ -1.38
SOX4Q06945 RN7SKP151-201ENST00000410230 316 ntBASIC6.41□□□□□ -1.38
SOX4Q06945 AL590806.1-201ENST00000415818 853 ntBASIC6.41□□□□□ -1.38
SOX4Q06945 NPM1P22-201ENST00000427761 952 ntBASIC6.41□□□□□ -1.38
SOX4Q06945 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC6.41□□□□□ -1.38
SOX4Q06945 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC6.41□□□□□ -1.38
SOX4Q06945 AP001324.1-201ENST00000428553 399 ntBASIC6.41□□□□□ -1.38
SOX4Q06945 FTH1P16-201ENST00000435241 552 ntBASIC6.41□□□□□ -1.38
SOX4Q06945 CYCSP11-201ENST00000436426 315 ntBASIC6.41□□□□□ -1.38
SOX4Q06945 NDUFA5P4-201ENST00000436704 385 ntBASIC6.41□□□□□ -1.38
SOX4Q06945 TUBB4BP6-201ENST00000437576 479 ntBASIC6.41□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms