Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC6.39□□□□□ -1.39
LIG3P49916 ELOCP10-201ENST00000440624 327 ntBASIC6.39□□□□□ -1.39
LIG3P49916 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC6.39□□□□□ -1.39
LIG3P49916 CXCR2P1-202ENST00000443392 1074 ntBASIC6.39□□□□□ -1.39
LIG3P49916 MTATP6P30-201ENST00000443540 664 ntBASIC6.39□□□□□ -1.39
LIG3P49916 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC6.39□□□□□ -1.39
LIG3P49916 OR52E7P-201ENST00000452394 933 ntBASIC6.39□□□□□ -1.39
LIG3P49916 NDUFA5P7-201ENST00000452914 242 ntBASIC6.39□□□□□ -1.39
LIG3P49916 AL035690.1-201ENST00000490892 383 ntBASIC6.39□□□□□ -1.39
LIG3P49916 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC6.39□□□□□ -1.39
LIG3P49916 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC6.39□□□□□ -1.39
LIG3P49916 ST13P12-201ENST00000508958 1094 ntBASIC6.39□□□□□ -1.39
LIG3P49916 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC6.39□□□□□ -1.39
LIG3P49916 SNORA70.11-201ENST00000515987 138 ntBASIC6.39□□□□□ -1.39
LIG3P49916 SNORA70.13-201ENST00000516116 138 ntBASIC6.39□□□□□ -1.39
LIG3P49916 PAICSP4-201ENST00000517543 1253 ntBASIC6.39□□□□□ -1.39
LIG3P49916 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC6.39□□□□□ -1.39
LIG3P49916 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC6.39□□□□□ -1.39
LIG3P49916 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC6.39□□□□□ -1.39
LIG3P49916 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC6.39□□□□□ -1.39
LIG3P49916 AL078601.3-201ENST00000573303 535 ntBASIC6.39□□□□□ -1.39
LIG3P49916 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC6.39□□□□□ -1.39
LIG3P49916 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC6.39□□□□□ -1.39
LIG3P49916 ELOCP34-201ENST00000604436 327 ntBASIC6.39□□□□□ -1.39
LIG3P49916 AC098614.4-201ENST00000607601 462 ntBASIC6.39□□□□□ -1.39
LIG3P49916 AL080312.2-201ENST00000613001 630 ntBASIC6.39□□□□□ -1.39
LIG3P49916 MIR7109-201ENST00000613748 65 ntBASIC6.39□□□□□ -1.39
LIG3P49916 uc_338.31-201ENST00000615595 186 ntBASIC6.39□□□□□ -1.39
LIG3P49916 AL591926.1-201ENST00000620542 217 ntBASIC6.39□□□□□ -1.39
LIG3P49916 AL132640.3-201ENST00000630473 177 ntBASIC6.39□□□□□ -1.39
LIG3P49916 CDRT1-208ENST00000630868 794 ntBASIC6.39□□□□□ -1.39
LIG3P49916 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC6.39□□□□□ -1.39
LIG3P49916 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
LIG3P49916 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
LIG3P49916 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC6.39□□□□□ -1.39
LIG3P49916 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
LIG3P49916 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
LIG3P49916 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
LIG3P49916 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC6.39□□□□□ -1.39
LIG3P49916 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
LIG3P49916 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC6.39□□□□□ -1.39
LIG3P49916 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
LIG3P49916 MTCO1P14-201ENST00000441695 1559 ntBASIC6.39□□□□□ -1.39
LIG3P49916 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC6.39□□□□□ -1.39
LIG3P49916 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC6.39□□□□□ -1.39
LIG3P49916 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
LIG3P49916 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
LIG3P49916 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
LIG3P49916 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
LIG3P49916 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
LIG3P49916 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC6.38□□□□□ -1.39
LIG3P49916 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
LIG3P49916 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
LIG3P49916 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
LIG3P49916 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
LIG3P49916 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
LIG3P49916 RNU1-65P-201ENST00000363919 148 ntBASIC6.38□□□□□ -1.39
LIG3P49916 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
LIG3P49916 Y_RNA.390-201ENST00000383932 102 ntBASIC6.38□□□□□ -1.39
LIG3P49916 RNU6-1151P-201ENST00000384684 107 ntBASIC6.38□□□□□ -1.39
LIG3P49916 AL157702.1-201ENST00000398764 426 ntBASIC6.38□□□□□ -1.39
LIG3P49916 YWHAZP6-201ENST00000399764 738 ntBASIC6.38□□□□□ -1.39
LIG3P49916 HMGB3P23-201ENST00000414981 585 ntBASIC6.38□□□□□ -1.39
LIG3P49916 USP9YP13-201ENST00000417797 480 ntBASIC6.38□□□□□ -1.39
LIG3P49916 VTI1BP4-201ENST00000427516 527 ntBASIC6.38□□□□□ -1.39
LIG3P49916 VDAC1P6-201ENST00000430062 855 ntBASIC6.38□□□□□ -1.39
LIG3P49916 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC6.38□□□□□ -1.39
LIG3P49916 AL031663.1-201ENST00000437445 219 ntBASIC6.38□□□□□ -1.39
LIG3P49916 CBX1P4-201ENST00000439415 457 ntBASIC6.38□□□□□ -1.39
LIG3P49916 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC6.38□□□□□ -1.39
LIG3P49916 POU5F1P5-201ENST00000445059 658 ntBASIC6.38□□□□□ -1.39
LIG3P49916 AL033528.1-201ENST00000453780 140 ntBASIC6.38□□□□□ -1.39
LIG3P49916 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC6.38□□□□□ -1.39
LIG3P49916 SNX18P26-201ENST00000458433 740 ntBASIC6.38□□□□□ -1.39
LIG3P49916 OR9A1P-202ENST00000484361 945 ntBASIC6.38□□□□□ -1.39
LIG3P49916 LARP1BP2-201ENST00000486594 519 ntBASIC6.38□□□□□ -1.39
LIG3P49916 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC6.38□□□□□ -1.39
LIG3P49916 AC108471.1-201ENST00000513977 287 ntBASIC6.38□□□□□ -1.39
LIG3P49916 RNU6-583P-201ENST00000516012 92 ntBASIC6.38□□□□□ -1.39
LIG3P49916 RNA5SP206-201ENST00000516703 121 ntBASIC6.38□□□□□ -1.39
LIG3P49916 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC6.38□□□□□ -1.39
LIG3P49916 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC6.38□□□□□ -1.39
LIG3P49916 DEFB131D-201ENST00000526803 184 ntBASIC6.38□□□□□ -1.39
LIG3P49916 AP002748.2-201ENST00000528671 348 ntBASIC6.38□□□□□ -1.39
LIG3P49916 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC6.38□□□□□ -1.39
LIG3P49916 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC6.38□□□□□ -1.39
LIG3P49916 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC6.38□□□□□ -1.39
LIG3P49916 AC124947.2-202ENST00000552735 133 ntBASIC6.38□□□□□ -1.39
LIG3P49916 AC107958.1-201ENST00000556576 290 ntBASIC6.38□□□□□ -1.39
LIG3P49916 CYCSP2-201ENST00000558168 301 ntBASIC6.38□□□□□ -1.39
LIG3P49916 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC6.38□□□□□ -1.39
LIG3P49916 AC019322.1-201ENST00000571869 389 ntBASIC6.38□□□□□ -1.39
LIG3P49916 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC6.38□□□□□ -1.39
LIG3P49916 AC115286.1-201ENST00000604298 434 ntBASIC6.38□□□□□ -1.39
LIG3P49916 AC010857.1-201ENST00000606398 594 ntBASIC6.38□□□□□ -1.39
LIG3P49916 AC008115.3-201ENST00000614874 549 ntBASIC6.38□□□□□ -1.39
LIG3P49916 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC6.38□□□□□ -1.39
LIG3P49916 AC138649.3-201ENST00000622154 254 ntBASIC6.38□□□□□ -1.39
LIG3P49916 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC6.38□□□□□ -1.39
LIG3P49916 AL157786.1-207ENST00000627771 695 ntBASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms