Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
COL18A1P39060 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
COL18A1P39060 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL18A1P39060 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC5.36□□□□□ -1.55
COL18A1P39060 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.36□□□□□ -1.55
COL18A1P39060 AL358178.1-201ENST00000407698 397 ntBASIC5.36□□□□□ -1.55
COL18A1P39060 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC5.36□□□□□ -1.55
COL18A1P39060 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC5.36□□□□□ -1.55
COL18A1P39060 NPM1P34-201ENST00000428821 893 ntBASIC5.36□□□□□ -1.55
COL18A1P39060 RPS26P2-201ENST00000440331 348 ntBASIC5.36□□□□□ -1.55
COL18A1P39060 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC5.36□□□□□ -1.55
COL18A1P39060 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC5.36□□□□□ -1.55
COL18A1P39060 RPL29P14-201ENST00000495837 428 ntBASIC5.36□□□□□ -1.55
COL18A1P39060 CYCSP28-201ENST00000534284 321 ntBASIC5.36□□□□□ -1.55
COL18A1P39060 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC5.36□□□□□ -1.55
COL18A1P39060 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC5.36□□□□□ -1.55
COL18A1P39060 MIR3200-201ENST00000580767 85 ntBASIC5.36□□□□□ -1.55
COL18A1P39060 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC5.36□□□□□ -1.55
COL18A1P39060 MYO6-201ENST00000369975 5387 ntTSL 5 BASIC5.36□□□□□ -1.55
COL18A1P39060 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
COL18A1P39060 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL18A1P39060 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
COL18A1P39060 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
COL18A1P39060 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL18A1P39060 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL18A1P39060 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL18A1P39060 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC5.35□□□□□ -1.55
COL18A1P39060 AL513548.1-201ENST00000562904 1724 ntBASIC5.35□□□□□ -1.55
COL18A1P39060 MIR491-201ENST00000384877 84 ntBASIC5.35□□□□□ -1.55
COL18A1P39060 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC5.35□□□□□ -1.55
COL18A1P39060 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC5.35□□□□□ -1.55
COL18A1P39060 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL18A1P39060 AL591473.1-201ENST00000464297 313 ntBASIC5.35□□□□□ -1.55
COL18A1P39060 RPS26P28-201ENST00000470806 348 ntBASIC5.35□□□□□ -1.55
COL18A1P39060 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL18A1P39060 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC5.35□□□□□ -1.55
COL18A1P39060 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC5.35□□□□□ -1.55
COL18A1P39060 AC064801.1-201ENST00000612025 407 ntBASIC5.35□□□□□ -1.55
COL18A1P39060 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL18A1P39060 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL18A1P39060 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL18A1P39060 NOX4-214ENST00000532825 2039 ntTSL 2 BASIC5.35□□□□□ -1.55
COL18A1P39060 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL18A1P39060 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
COL18A1P39060 DCHS2-207ENST00000623607 8912 ntAPPRIS P2 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL18A1P39060 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
COL18A1P39060 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
COL18A1P39060 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL18A1P39060 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC5.34□□□□□ -1.55
COL18A1P39060 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL18A1P39060 CYCSP10-201ENST00000417973 294 ntBASIC5.34□□□□□ -1.55
COL18A1P39060 PRELID3BP10-201ENST00000431957 584 ntBASIC5.34□□□□□ -1.55
COL18A1P39060 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC5.34□□□□□ -1.55
COL18A1P39060 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC5.34□□□□□ -1.55
COL18A1P39060 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC5.34□□□□□ -1.55
COL18A1P39060 PHBP17-201ENST00000528576 541 ntBASIC5.34□□□□□ -1.55
COL18A1P39060 AC093014.1-201ENST00000548926 724 ntBASIC5.34□□□□□ -1.55
COL18A1P39060 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC5.34□□□□□ -1.55
COL18A1P39060 AC073530.2-201ENST00000623987 261 ntBASIC5.34□□□□□ -1.55
COL18A1P39060 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL18A1P39060 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL18A1P39060 AL355596.1-201ENST00000565399 3996 ntBASIC5.34□□□□□ -1.55
COL18A1P39060 EEF1A1P42-201ENST00000613436 1331 ntBASIC5.34□□□□□ -1.55
COL18A1P39060 ZNF962P-201ENST00000443465 3140 ntBASIC5.34□□□□□ -1.55
COL18A1P39060 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC5.34□□□□□ -1.55
COL18A1P39060 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL18A1P39060 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL18A1P39060 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
COL18A1P39060 VDAC1P9-201ENST00000412766 841 ntBASIC5.34□□□□□ -1.56
COL18A1P39060 AL161631.1-201ENST00000417933 486 ntBASIC5.34□□□□□ -1.56
COL18A1P39060 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC5.34□□□□□ -1.56
COL18A1P39060 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC5.34□□□□□ -1.56
COL18A1P39060 RAD23BP3-201ENST00000454157 1152 ntBASIC5.34□□□□□ -1.56
COL18A1P39060 AC007967.1-201ENST00000455422 1159 ntBASIC5.34□□□□□ -1.56
COL18A1P39060 RPL23AP65-201ENST00000475608 468 ntBASIC5.34□□□□□ -1.56
COL18A1P39060 AC138832.1-201ENST00000522871 556 ntBASIC5.34□□□□□ -1.56
COL18A1P39060 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC5.34□□□□□ -1.56
COL18A1P39060 AC005412.1-201ENST00000580812 1049 ntBASIC5.34□□□□□ -1.56
COL18A1P39060 AC011471.1-201ENST00000585766 187 ntBASIC5.34□□□□□ -1.56
COL18A1P39060 AL034408.1-202ENST00000636088 415 ntBASIC5.34□□□□□ -1.56
COL18A1P39060 AF001550.2-201ENST00000636643 217 ntBASIC5.34□□□□□ -1.56
COL18A1P39060 CNNM2-202ENST00000369878 15857 ntAPPRIS P4 TSL 1 (best) BASIC5.34□□□□□ -1.56
COL18A1P39060 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
COL18A1P39060 ZNF573-202ENST00000357309 2124 ntTSL 5 BASIC5.34□□□□□ -1.56
COL18A1P39060 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.33□□□□□ -1.56
COL18A1P39060 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL18A1P39060 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL18A1P39060 AL356274.2-201ENST00000624379 3752 ntBASIC5.33□□□□□ -1.56
COL18A1P39060 PTMAP5-201ENST00000393073 333 ntBASIC5.33□□□□□ -1.56
COL18A1P39060 NDUFB4P4-201ENST00000404822 243 ntBASIC5.33□□□□□ -1.56
COL18A1P39060 TRIM60P17-201ENST00000415181 719 ntBASIC5.33□□□□□ -1.56
COL18A1P39060 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC5.33□□□□□ -1.56
COL18A1P39060 AL159987.2-201ENST00000432754 307 ntBASIC5.33□□□□□ -1.56
COL18A1P39060 HMGN1P15-201ENST00000513870 295 ntBASIC5.33□□□□□ -1.56
COL18A1P39060 AC093853.1-201ENST00000515689 483 ntBASIC5.33□□□□□ -1.56
COL18A1P39060 TBCA-203ENST00000517679 545 ntTSL 3 BASIC5.33□□□□□ -1.56
COL18A1P39060 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC5.33□□□□□ -1.56
COL18A1P39060 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.33□□□□□ -1.56
COL18A1P39060 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC5.33□□□□□ -1.56
COL18A1P39060 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms