Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
BRCA1P38398 AC017078.1-201ENST00000416146 368 ntBASIC5.07□□□□□ -1.6
BRCA1P38398 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC5.07□□□□□ -1.6
BRCA1P38398 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC5.07□□□□□ -1.6
BRCA1P38398 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC5.07□□□□□ -1.6
BRCA1P38398 PRDX3P3-201ENST00000447765 522 ntBASIC5.07□□□□□ -1.6
BRCA1P38398 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC5.07□□□□□ -1.6
BRCA1P38398 HPRT1P2-201ENST00000505250 544 ntBASIC5.07□□□□□ -1.6
BRCA1P38398 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
BRCA1P38398 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC5.07□□□□□ -1.6
BRCA1P38398 MIR7975-201ENST00000619350 68 ntBASIC5.07□□□□□ -1.6
BRCA1P38398 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.07□□□□□ -1.6
BRCA1P38398 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
BRCA1P38398 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.07□□□□□ -1.6
BRCA1P38398 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
BRCA1P38398 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
BRCA1P38398 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
BRCA1P38398 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
BRCA1P38398 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC5.07□□□□□ -1.6
BRCA1P38398 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
BRCA1P38398 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
BRCA1P38398 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
BRCA1P38398 AL157385.1-201ENST00000446973 268 ntBASIC5.07□□□□□ -1.6
BRCA1P38398 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC5.07□□□□□ -1.6
BRCA1P38398 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.07□□□□□ -1.6
BRCA1P38398 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC5.07□□□□□ -1.6
BRCA1P38398 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC5.07□□□□□ -1.6
BRCA1P38398 PTS-202ENST00000524931 696 ntTSL 3 BASIC5.07□□□□□ -1.6
BRCA1P38398 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC5.07□□□□□ -1.6
BRCA1P38398 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC5.07□□□□□ -1.6
BRCA1P38398 AC127024.5-201ENST00000580085 462 ntBASIC5.07□□□□□ -1.6
BRCA1P38398 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC5.07□□□□□ -1.6
BRCA1P38398 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC5.07□□□□□ -1.6
BRCA1P38398 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.07□□□□□ -1.6
BRCA1P38398 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
BRCA1P38398 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.06□□□□□ -1.6
BRCA1P38398 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
BRCA1P38398 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
BRCA1P38398 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
BRCA1P38398 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
BRCA1P38398 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
BRCA1P38398 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
BRCA1P38398 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
BRCA1P38398 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
BRCA1P38398 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.06□□□□□ -1.6
BRCA1P38398 DMD-211ENST00000378707 7410 ntTSL 5 BASIC5.06□□□□□ -1.6
BRCA1P38398 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC5.06□□□□□ -1.6
BRCA1P38398 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC5.06□□□□□ -1.6
BRCA1P38398 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC5.06□□□□□ -1.6
BRCA1P38398 HSPD1P15-201ENST00000505573 1122 ntBASIC5.06□□□□□ -1.6
BRCA1P38398 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC5.06□□□□□ -1.6
BRCA1P38398 KRT19P6-201ENST00000510983 209 ntBASIC5.06□□□□□ -1.6
BRCA1P38398 SCARNA14-201ENST00000516903 136 ntBASIC5.06□□□□□ -1.6
BRCA1P38398 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC5.06□□□□□ -1.6
BRCA1P38398 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC5.06□□□□□ -1.6
BRCA1P38398 MIR5195-201ENST00000583555 115 ntBASIC5.06□□□□□ -1.6
BRCA1P38398 PCNP-208ENST00000627393 136 ntTSL 2 BASIC5.06□□□□□ -1.6
BRCA1P38398 CA1-225ENST00000626824 2405 ntTSL 5 BASIC5.06□□□□□ -1.6
BRCA1P38398 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
BRCA1P38398 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
BRCA1P38398 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
BRCA1P38398 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
BRCA1P38398 AC021242.1-201ENST00000507315 2035 ntBASIC5.06□□□□□ -1.6
BRCA1P38398 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
BRCA1P38398 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
BRCA1P38398 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC5.05□□□□□ -1.6
BRCA1P38398 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
BRCA1P38398 RNA5SP399-201ENST00000364003 117 ntBASIC5.05□□□□□ -1.6
BRCA1P38398 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
BRCA1P38398 AL358178.1-201ENST00000407698 397 ntBASIC5.05□□□□□ -1.6
BRCA1P38398 RN7SKP177-201ENST00000410567 355 ntBASIC5.05□□□□□ -1.6
BRCA1P38398 EIF1P3-201ENST00000423841 334 ntBASIC5.05□□□□□ -1.6
BRCA1P38398 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC5.05□□□□□ -1.6
BRCA1P38398 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
BRCA1P38398 RPS29P19-201ENST00000479709 171 ntBASIC5.05□□□□□ -1.6
BRCA1P38398 DEFB109A-201ENST00000482450 265 ntBASIC5.05□□□□□ -1.6
BRCA1P38398 RNA5SP497-201ENST00000516081 97 ntBASIC5.05□□□□□ -1.6
BRCA1P38398 MIR4472-2-201ENST00000582069 67 ntBASIC5.05□□□□□ -1.6
BRCA1P38398 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC5.05□□□□□ -1.6
BRCA1P38398 ZNF962P-201ENST00000443465 3140 ntBASIC5.05□□□□□ -1.6
BRCA1P38398 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC5.05□□□□□ -1.6
BRCA1P38398 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
BRCA1P38398 AC074029.4-201ENST00000624796 1859 ntBASIC5.05□□□□□ -1.6
BRCA1P38398 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
BRCA1P38398 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
BRCA1P38398 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
BRCA1P38398 RNU2-65P-201ENST00000410162 185 ntBASIC5.05□□□□□ -1.6
BRCA1P38398 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC5.05□□□□□ -1.6
BRCA1P38398 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC5.05□□□□□ -1.6
BRCA1P38398 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC5.05□□□□□ -1.6
BRCA1P38398 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
BRCA1P38398 OR9M1P-201ENST00000459641 921 ntBASIC5.05□□□□□ -1.6
BRCA1P38398 RPS3AP6-201ENST00000484430 795 ntBASIC5.05□□□□□ -1.6
BRCA1P38398 RN7SL323P-201ENST00000494712 295 ntBASIC5.05□□□□□ -1.6
BRCA1P38398 GMPSP1-201ENST00000514075 579 ntBASIC5.05□□□□□ -1.6
BRCA1P38398 OSBPL9P2-201ENST00000526582 1228 ntBASIC5.05□□□□□ -1.6
BRCA1P38398 AC010503.3-201ENST00000594355 540 ntBASIC5.05□□□□□ -1.6
BRCA1P38398 AC114878.2-201ENST00000604863 1251 ntBASIC5.05□□□□□ -1.6
BRCA1P38398 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
BRCA1P38398 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms