Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC6.48□□□□□ -1.37
MSX1P28360 AP002373.2-201ENST00000541631 1060 ntBASIC6.48□□□□□ -1.37
MSX1P28360 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC6.48□□□□□ -1.37
MSX1P28360 TRIM69-204ENST00000558329 1211 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
MSX1P28360 AC008269.2-201ENST00000561915 1105 ntBASIC6.48□□□□□ -1.37
MSX1P28360 AC023827.2-201ENST00000566880 1061 ntBASIC6.48□□□□□ -1.37
MSX1P28360 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC6.48□□□□□ -1.37
MSX1P28360 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC6.48□□□□□ -1.37
MSX1P28360 IGKV2OR2-7D-201ENST00000603664 304 ntBASIC6.48□□□□□ -1.37
MSX1P28360 IGKV2OR2-7-201ENST00000604652 304 ntBASIC6.48□□□□□ -1.37
MSX1P28360 AC122710.3-201ENST00000606566 541 ntBASIC6.48□□□□□ -1.37
MSX1P28360 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
MSX1P28360 HMGB1P24-202ENST00000615653 685 ntBASIC6.48□□□□□ -1.37
MSX1P28360 GART-204ENST00000381831 3490 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
MSX1P28360 WDR95P-201ENST00000425638 1542 ntBASIC6.48□□□□□ -1.37
MSX1P28360 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
MSX1P28360 NR1H4-206ENST00000548884 2884 ntAPPRIS P3 TSL 1 (best) BASIC6.48□□□□□ -1.37
MSX1P28360 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC6.48□□□□□ -1.37
MSX1P28360 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC6.48□□□□□ -1.37
MSX1P28360 SPECC1L-207ENST00000541492 3525 ntTSL 2 BASIC6.48□□□□□ -1.37
MSX1P28360 CYB5B-201ENST00000307892 4286 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
MSX1P28360 AC007485.2-201ENST00000623493 1667 ntBASIC6.48□□□□□ -1.37
MSX1P28360 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC6.48□□□□□ -1.37
MSX1P28360 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC6.48□□□□□ -1.37
MSX1P28360 DMD-228ENST00000541735 7080 ntTSL 5 BASIC6.48□□□□□ -1.37
MSX1P28360 AC122713.2-201ENST00000624942 3335 ntBASIC6.48□□□□□ -1.37
MSX1P28360 DMC1-203ENST00000428462 2082 ntTSL 2 BASIC6.48□□□□□ -1.37
MSX1P28360 ASNSP3-201ENST00000451989 1306 ntBASIC6.48□□□□□ -1.37
MSX1P28360 POT1-AS1-204ENST00000449642 3238 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
MSX1P28360 ZC3H11B-201ENST00000367211 2994 ntAPPRIS P5 TSL 5 BASIC6.48□□□□□ -1.37
MSX1P28360 AMOT-202ENST00000371958 2462 ntAPPRIS ALT2 TSL 5 BASIC6.48□□□□□ -1.37
MSX1P28360 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
MSX1P28360 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC6.47□□□□□ -1.37
MSX1P28360 CTAGE11P-201ENST00000451540 2353 ntBASIC6.47□□□□□ -1.37
MSX1P28360 MTFR1L-207ENST00000466284 3262 ntTSL 2 BASIC6.47□□□□□ -1.37
MSX1P28360 GDNF-202ENST00000344622 3655 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
MSX1P28360 PPFIBP1-202ENST00000318304 6001 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
MSX1P28360 CNTNAP4-206ENST00000478060 3708 ntTSL 5 BASIC6.47□□□□□ -1.37
MSX1P28360 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC6.47□□□□□ -1.37
MSX1P28360 HDAC1P2-201ENST00000453661 1398 ntBASIC6.47□□□□□ -1.37
MSX1P28360 SENP8-201ENST00000340912 4281 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
MSX1P28360 RBM41-202ENST00000372487 2579 ntAPPRIS ALT1 TSL 2 BASIC6.47□□□□□ -1.37
MSX1P28360 GPR1-209ENST00000612892 2565 ntAPPRIS P1 TSL 4 BASIC6.47□□□□□ -1.37
MSX1P28360 ZNF699-201ENST00000308650 2094 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
MSX1P28360 SCGB1A1-201ENST00000278282 441 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
MSX1P28360 OR1S2-201ENST00000302592 978 ntBASIC6.47□□□□□ -1.37
MSX1P28360 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC6.47□□□□□ -1.37
MSX1P28360 RN7SKP118-201ENST00000364331 330 ntBASIC6.47□□□□□ -1.37
MSX1P28360 RNU4-26P-201ENST00000410270 107 ntBASIC6.47□□□□□ -1.37
MSX1P28360 AL354890.1-201ENST00000413730 346 ntBASIC6.47□□□□□ -1.37
MSX1P28360 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC6.47□□□□□ -1.37
MSX1P28360 AC005162.1-201ENST00000416513 389 ntTSL 5 BASIC6.47□□□□□ -1.37
MSX1P28360 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC6.47□□□□□ -1.37
MSX1P28360 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC6.47□□□□□ -1.37
MSX1P28360 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC6.47□□□□□ -1.37
MSX1P28360 AL158212.1-201ENST00000428766 315 ntTSL 5 BASIC6.47□□□□□ -1.37
MSX1P28360 RPS10P21-201ENST00000430654 475 ntBASIC6.47□□□□□ -1.37
MSX1P28360 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC6.47□□□□□ -1.37
MSX1P28360 SDHCP3-201ENST00000445371 506 ntBASIC6.47□□□□□ -1.37
MSX1P28360 DDX3P2-201ENST00000446138 111 ntBASIC6.47□□□□□ -1.37
MSX1P28360 DEFA11P-201ENST00000446470 261 ntBASIC6.47□□□□□ -1.37
MSX1P28360 AL034399.1-201ENST00000451535 380 ntBASIC6.47□□□□□ -1.37
MSX1P28360 AC009518.1-201ENST00000452219 559 ntTSL 4 BASIC6.47□□□□□ -1.37
MSX1P28360 APOOP2-201ENST00000461561 539 ntBASIC6.47□□□□□ -1.37
MSX1P28360 RPL31P50-201ENST00000471002 296 ntBASIC6.47□□□□□ -1.37
MSX1P28360 RAD51AP1P1-201ENST00000484195 1001 ntBASIC6.47□□□□□ -1.37
MSX1P28360 AC010168.1-201ENST00000501178 657 ntTSL 3 BASIC6.47□□□□□ -1.37
MSX1P28360 AC024558.1-201ENST00000505008 528 ntBASIC6.47□□□□□ -1.37
MSX1P28360 AC104136.1-201ENST00000512969 394 ntBASIC6.47□□□□□ -1.37
MSX1P28360 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC6.47□□□□□ -1.37
MSX1P28360 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC6.47□□□□□ -1.37
MSX1P28360 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC6.47□□□□□ -1.37
MSX1P28360 SCARNA18.2-201ENST00000516882 84 ntBASIC6.47□□□□□ -1.37
MSX1P28360 COX6CP8-201ENST00000522620 226 ntBASIC6.47□□□□□ -1.37
MSX1P28360 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC6.47□□□□□ -1.37
MSX1P28360 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC6.47□□□□□ -1.37
MSX1P28360 PMS2P3-207ENST00000529061 717 ntBASIC6.47□□□□□ -1.37
MSX1P28360 OR5M6P-201ENST00000530227 937 ntBASIC6.47□□□□□ -1.37
MSX1P28360 AC079089.1-203ENST00000533300 431 ntTSL 5 BASIC6.47□□□□□ -1.37
MSX1P28360 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC6.47□□□□□ -1.37
MSX1P28360 AC090673.2-201ENST00000544279 454 ntTSL 3 BASIC6.47□□□□□ -1.37
MSX1P28360 AC089984.3-201ENST00000552838 363 ntBASIC6.47□□□□□ -1.37
MSX1P28360 OR4T1P-201ENST00000554933 911 ntBASIC6.47□□□□□ -1.37
MSX1P28360 AC068831.4-201ENST00000556118 109 ntBASIC6.47□□□□□ -1.37
MSX1P28360 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC6.47□□□□□ -1.37
MSX1P28360 AC018690.1-201ENST00000608144 626 ntBASIC6.47□□□□□ -1.37
MSX1P28360 AP003481.1-202ENST00000608214 503 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
MSX1P28360 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC6.47□□□□□ -1.37
MSX1P28360 MIR7973-1-201ENST00000614683 76 ntBASIC6.47□□□□□ -1.37
MSX1P28360 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC6.47□□□□□ -1.37
MSX1P28360 AC090510.2-201ENST00000617465 629 ntBASIC6.47□□□□□ -1.37
MSX1P28360 AC145207.9-201ENST00000623802 325 ntBASIC6.47□□□□□ -1.37
MSX1P28360 AC022418.1-201ENST00000624118 445 ntBASIC6.47□□□□□ -1.37
MSX1P28360 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
MSX1P28360 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
MSX1P28360 AGXT2-201ENST00000231420 2364 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
MSX1P28360 TLR10-204ENST00000506111 3462 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
MSX1P28360 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
MSX1P28360 DNM1L-202ENST00000358214 3229 ntTSL 5 BASIC6.47□□□□□ -1.37
MSX1P28360 KLHL7-203ENST00000409689 3231 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms