Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
MSH3P20585 ZNF90P1-201ENST00000480493 1951 ntBASIC4.71□□□□□ -1.66
MSH3P20585 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
MSH3P20585 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
MSH3P20585 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
MSH3P20585 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
MSH3P20585 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
MSH3P20585 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
MSH3P20585 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
MSH3P20585 AL121950.1-201ENST00000624993 2077 ntBASIC4.7□□□□□ -1.66
MSH3P20585 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
MSH3P20585 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
MSH3P20585 RNU4-7P-201ENST00000364758 141 ntBASIC4.7□□□□□ -1.66
MSH3P20585 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
MSH3P20585 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
MSH3P20585 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.7□□□□□ -1.66
MSH3P20585 BX510359.2-201ENST00000417920 305 ntBASIC4.7□□□□□ -1.66
MSH3P20585 OR51A6P-201ENST00000418680 1004 ntBASIC4.7□□□□□ -1.66
MSH3P20585 VN1R42P-201ENST00000424651 344 ntBASIC4.7□□□□□ -1.66
MSH3P20585 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC4.7□□□□□ -1.66
MSH3P20585 AC011242.1-201ENST00000433596 1158 ntBASIC4.7□□□□□ -1.66
MSH3P20585 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.7□□□□□ -1.66
MSH3P20585 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.7□□□□□ -1.66
MSH3P20585 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC4.7□□□□□ -1.66
MSH3P20585 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC4.7□□□□□ -1.66
MSH3P20585 AC108751.2-201ENST00000469993 231 ntBASIC4.7□□□□□ -1.66
MSH3P20585 SETP6-201ENST00000479329 568 ntBASIC4.7□□□□□ -1.66
MSH3P20585 NIP7P2-201ENST00000485801 544 ntBASIC4.7□□□□□ -1.66
MSH3P20585 AC231760.1-201ENST00000498002 260 ntBASIC4.7□□□□□ -1.66
MSH3P20585 SCARNA22-201ENST00000503991 125 ntBASIC4.7□□□□□ -1.66
MSH3P20585 OR7H2P-201ENST00000513483 306 ntBASIC4.7□□□□□ -1.66
MSH3P20585 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC4.7□□□□□ -1.66
MSH3P20585 RNA5SP464-201ENST00000516251 108 ntBASIC4.7□□□□□ -1.66
MSH3P20585 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC4.7□□□□□ -1.66
MSH3P20585 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC4.7□□□□□ -1.66
MSH3P20585 GLRXP2-201ENST00000555594 321 ntBASIC4.7□□□□□ -1.66
MSH3P20585 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.7□□□□□ -1.66
MSH3P20585 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC4.7□□□□□ -1.66
MSH3P20585 CBX3P2-202ENST00000583365 535 ntBASIC4.7□□□□□ -1.66
MSH3P20585 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.7□□□□□ -1.66
MSH3P20585 AC005034.4-201ENST00000603612 899 ntBASIC4.7□□□□□ -1.66
MSH3P20585 AL008729.2-201ENST00000606393 473 ntBASIC4.7□□□□□ -1.66
MSH3P20585 AC100827.5-201ENST00000615883 426 ntBASIC4.7□□□□□ -1.66
MSH3P20585 AL356274.1-201ENST00000617064 410 ntBASIC4.7□□□□□ -1.66
MSH3P20585 AP003476.1-201ENST00000623984 516 ntBASIC4.7□□□□□ -1.66
MSH3P20585 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC4.7□□□□□ -1.66
MSH3P20585 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.7□□□□□ -1.66
MSH3P20585 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
MSH3P20585 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
MSH3P20585 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
MSH3P20585 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.7□□□□□ -1.66
MSH3P20585 AL445487.1-201ENST00000415694 1580 ntBASIC4.7□□□□□ -1.66
MSH3P20585 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
MSH3P20585 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
MSH3P20585 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC4.69□□□□□ -1.66
MSH3P20585 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC4.69□□□□□ -1.66
MSH3P20585 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
MSH3P20585 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
MSH3P20585 RNU6-252P-201ENST00000363232 107 ntBASIC4.69□□□□□ -1.66
MSH3P20585 RNA5SP87-201ENST00000384155 118 ntBASIC4.69□□□□□ -1.66
MSH3P20585 AL034403.1-201ENST00000399414 885 ntBASIC4.69□□□□□ -1.66
MSH3P20585 AL591848.1-201ENST00000413092 322 ntBASIC4.69□□□□□ -1.66
MSH3P20585 TATDN1P1-201ENST00000414123 891 ntBASIC4.69□□□□□ -1.66
MSH3P20585 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC4.69□□□□□ -1.66
MSH3P20585 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC4.69□□□□□ -1.66
MSH3P20585 AL645608.4-201ENST00000423619 154 ntBASIC4.69□□□□□ -1.66
MSH3P20585 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC4.69□□□□□ -1.66
MSH3P20585 AC013262.1-201ENST00000426710 252 ntBASIC4.69□□□□□ -1.66
MSH3P20585 AL160175.1-201ENST00000428124 247 ntBASIC4.69□□□□□ -1.66
MSH3P20585 AL049745.1-201ENST00000433953 286 ntBASIC4.69□□□□□ -1.66
MSH3P20585 MTCYBP29-201ENST00000436327 1006 ntBASIC4.69□□□□□ -1.66
MSH3P20585 AC005154.2-201ENST00000438110 379 ntBASIC4.69□□□□□ -1.66
MSH3P20585 AC016831.4-201ENST00000438302 307 ntBASIC4.69□□□□□ -1.66
MSH3P20585 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC4.69□□□□□ -1.66
MSH3P20585 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC4.69□□□□□ -1.66
MSH3P20585 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC4.69□□□□□ -1.66
MSH3P20585 AC079168.2-201ENST00000453977 416 ntBASIC4.69□□□□□ -1.66
MSH3P20585 ATP5A1P7-201ENST00000453978 1279 ntBASIC4.69□□□□□ -1.66
MSH3P20585 RPL5P13-201ENST00000462840 709 ntBASIC4.69□□□□□ -1.66
MSH3P20585 AC037198.2-201ENST00000478845 733 ntBASIC4.69□□□□□ -1.66
MSH3P20585 AC105233.1-201ENST00000498840 781 ntBASIC4.69□□□□□ -1.66
MSH3P20585 AC112518.2-201ENST00000508565 425 ntBASIC4.69□□□□□ -1.66
MSH3P20585 AC010460.2-201ENST00000509054 677 ntBASIC4.69□□□□□ -1.66
MSH3P20585 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
MSH3P20585 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC4.69□□□□□ -1.66
MSH3P20585 HAUS1P3-201ENST00000523909 662 ntBASIC4.69□□□□□ -1.66
MSH3P20585 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.69□□□□□ -1.66
MSH3P20585 OR8X1P-201ENST00000534542 869 ntBASIC4.69□□□□□ -1.66
MSH3P20585 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.69□□□□□ -1.66
MSH3P20585 FKBP1BP1-201ENST00000553366 325 ntBASIC4.69□□□□□ -1.66
MSH3P20585 MTND1P8-201ENST00000571424 950 ntBASIC4.69□□□□□ -1.66
MSH3P20585 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC4.69□□□□□ -1.66
MSH3P20585 AC026741.1-201ENST00000605892 482 ntBASIC4.69□□□□□ -1.66
MSH3P20585 AC034236.3-201ENST00000605999 461 ntBASIC4.69□□□□□ -1.66
MSH3P20585 AC027449.1-201ENST00000608890 407 ntBASIC4.69□□□□□ -1.66
MSH3P20585 AC019131.2-201ENST00000609071 870 ntBASIC4.69□□□□□ -1.66
MSH3P20585 AP005229.2-201ENST00000609980 697 ntBASIC4.69□□□□□ -1.66
MSH3P20585 AL050303.3-201ENST00000613704 284 ntBASIC4.69□□□□□ -1.66
MSH3P20585 MIR6853-201ENST00000619642 74 ntBASIC4.69□□□□□ -1.66
MSH3P20585 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms