Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 VN1R8P-201ENST00000407739 893 ntBASIC4.28□□□□□ -1.72
HMGA1P17096 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.28□□□□□ -1.72
HMGA1P17096 TBCAP1-201ENST00000436520 327 ntBASIC4.28□□□□□ -1.72
HMGA1P17096 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HMGA1P17096 RPS29P7-201ENST00000439662 171 ntBASIC4.28□□□□□ -1.72
HMGA1P17096 RPS4XP4-201ENST00000443195 763 ntBASIC4.28□□□□□ -1.72
HMGA1P17096 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC4.28□□□□□ -1.72
HMGA1P17096 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.28□□□□□ -1.72
HMGA1P17096 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.28□□□□□ -1.72
HMGA1P17096 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC4.28□□□□□ -1.72
HMGA1P17096 AC008694.2-201ENST00000517591 306 ntBASIC4.28□□□□□ -1.72
HMGA1P17096 MED28P5-201ENST00000528254 438 ntBASIC4.28□□□□□ -1.72
HMGA1P17096 AC100770.1-201ENST00000532310 322 ntBASIC4.28□□□□□ -1.72
HMGA1P17096 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HMGA1P17096 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.28□□□□□ -1.72
HMGA1P17096 AC114878.2-201ENST00000604863 1251 ntBASIC4.28□□□□□ -1.72
HMGA1P17096 MIR6868-201ENST00000611215 58 ntBASIC4.28□□□□□ -1.72
HMGA1P17096 AC064801.1-201ENST00000612025 407 ntBASIC4.28□□□□□ -1.72
HMGA1P17096 PDCD6IPP1-202ENST00000622242 1064 ntBASIC4.28□□□□□ -1.72
HMGA1P17096 AC138907.10-201ENST00000623708 983 ntBASIC4.28□□□□□ -1.72
HMGA1P17096 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC4.28□□□□□ -1.72
HMGA1P17096 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.28□□□□□ -1.72
HMGA1P17096 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
HMGA1P17096 FAM91A3P-201ENST00000456826 2544 ntBASIC4.28□□□□□ -1.72
HMGA1P17096 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HMGA1P17096 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HMGA1P17096 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
HMGA1P17096 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
HMGA1P17096 AC139713.2-215ENST00000641428 5037 ntBASIC4.27□□□□□ -1.73
HMGA1P17096 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HMGA1P17096 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC4.27□□□□□ -1.73
HMGA1P17096 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.27□□□□□ -1.73
HMGA1P17096 RNA5SP372-201ENST00000390836 115 ntBASIC4.27□□□□□ -1.73
HMGA1P17096 RNU6-316P-201ENST00000391027 107 ntBASIC4.27□□□□□ -1.73
HMGA1P17096 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HMGA1P17096 RNU6ATAC34P-201ENST00000408879 121 ntBASIC4.27□□□□□ -1.73
HMGA1P17096 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.27□□□□□ -1.73
HMGA1P17096 PRELID3BP10-201ENST00000431957 584 ntBASIC4.27□□□□□ -1.73
HMGA1P17096 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC4.27□□□□□ -1.73
HMGA1P17096 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.27□□□□□ -1.73
HMGA1P17096 RPL23AP89-201ENST00000439324 255 ntBASIC4.27□□□□□ -1.73
HMGA1P17096 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.27□□□□□ -1.73
HMGA1P17096 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.27□□□□□ -1.73
HMGA1P17096 RPL36AP13-201ENST00000457490 317 ntBASIC4.27□□□□□ -1.73
HMGA1P17096 PSMC1P13-201ENST00000458195 985 ntBASIC4.27□□□□□ -1.73
HMGA1P17096 SNORA84-201ENST00000459229 133 ntBASIC4.27□□□□□ -1.73
HMGA1P17096 AC007537.2-201ENST00000472093 511 ntBASIC4.27□□□□□ -1.73
HMGA1P17096 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
HMGA1P17096 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC4.27□□□□□ -1.73
HMGA1P17096 NPM1P41-201ENST00000512920 831 ntBASIC4.27□□□□□ -1.73
HMGA1P17096 AC110743.1-201ENST00000584870 478 ntBASIC4.27□□□□□ -1.73
HMGA1P17096 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.27□□□□□ -1.73
HMGA1P17096 AL606490.9-201ENST00000603331 271 ntBASIC4.27□□□□□ -1.73
HMGA1P17096 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC4.27□□□□□ -1.73
HMGA1P17096 MIR6500-201ENST00000622700 86 ntBASIC4.27□□□□□ -1.73
HMGA1P17096 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.27□□□□□ -1.73
HMGA1P17096 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HMGA1P17096 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
HMGA1P17096 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HMGA1P17096 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
HMGA1P17096 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HMGA1P17096 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HMGA1P17096 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC4.26□□□□□ -1.73
HMGA1P17096 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.26□□□□□ -1.73
HMGA1P17096 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.26□□□□□ -1.73
HMGA1P17096 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HMGA1P17096 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.26□□□□□ -1.73
HMGA1P17096 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
HMGA1P17096 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.26□□□□□ -1.73
HMGA1P17096 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HMGA1P17096 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
HMGA1P17096 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
HMGA1P17096 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
HMGA1P17096 SNORA60-201ENST00000362396 134 ntBASIC4.26□□□□□ -1.73
HMGA1P17096 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.26□□□□□ -1.73
HMGA1P17096 SNORA48.7-201ENST00000391302 135 ntBASIC4.26□□□□□ -1.73
HMGA1P17096 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HMGA1P17096 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HMGA1P17096 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HMGA1P17096 OR5BE1P-201ENST00000425977 939 ntBASIC4.26□□□□□ -1.73
HMGA1P17096 AL691449.1-201ENST00000426570 421 ntBASIC4.26□□□□□ -1.73
HMGA1P17096 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HMGA1P17096 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.26□□□□□ -1.73
HMGA1P17096 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.26□□□□□ -1.73
HMGA1P17096 RN7SL542P-201ENST00000467147 294 ntBASIC4.26□□□□□ -1.73
HMGA1P17096 ARL4AP1-201ENST00000503220 705 ntBASIC4.26□□□□□ -1.73
HMGA1P17096 MTCO1P49-201ENST00000523429 802 ntBASIC4.26□□□□□ -1.73
HMGA1P17096 MTND1P6-201ENST00000523621 946 ntBASIC4.26□□□□□ -1.73
HMGA1P17096 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.26□□□□□ -1.73
HMGA1P17096 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.26□□□□□ -1.73
HMGA1P17096 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.26□□□□□ -1.73
HMGA1P17096 RPL23AP87-202ENST00000573039 466 ntBASIC4.26□□□□□ -1.73
HMGA1P17096 EIF4A2P1-201ENST00000587313 1063 ntBASIC4.26□□□□□ -1.73
HMGA1P17096 AL157762.1-201ENST00000619612 415 ntBASIC4.26□□□□□ -1.73
HMGA1P17096 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.26□□□□□ -1.73
HMGA1P17096 OR5BE1P-202ENST00000641168 1176 ntBASIC4.26□□□□□ -1.73
HMGA1P17096 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.26□□□□□ -1.73
HMGA1P17096 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.26□□□□□ -1.73
HMGA1P17096 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HMGA1P17096 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms