Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC6.32□□□□□ -1.4
HMGB1P09429 AC069306.1-201ENST00000507006 843 ntBASIC6.32□□□□□ -1.4
HMGB1P09429 AC016559.2-201ENST00000510759 359 ntBASIC6.32□□□□□ -1.4
HMGB1P09429 AC008837.1-201ENST00000511513 412 ntBASIC6.32□□□□□ -1.4
HMGB1P09429 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC6.32□□□□□ -1.4
HMGB1P09429 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC6.32□□□□□ -1.4
HMGB1P09429 LECT2-205ENST00000522943 574 ntTSL 3 BASIC6.32□□□□□ -1.4
HMGB1P09429 HMGB1P40-201ENST00000525121 540 ntBASIC6.32□□□□□ -1.4
HMGB1P09429 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC6.32□□□□□ -1.4
HMGB1P09429 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC6.32□□□□□ -1.4
HMGB1P09429 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC6.32□□□□□ -1.4
HMGB1P09429 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC6.32□□□□□ -1.4
HMGB1P09429 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC6.32□□□□□ -1.4
HMGB1P09429 OR4G1P-201ENST00000588632 938 ntBASIC6.32□□□□□ -1.4
HMGB1P09429 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC6.32□□□□□ -1.4
HMGB1P09429 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC6.32□□□□□ -1.4
HMGB1P09429 EIF3FP1-201ENST00000613970 806 ntBASIC6.32□□□□□ -1.4
HMGB1P09429 AC063976.2-201ENST00000425667 3556 ntBASIC6.32□□□□□ -1.4
HMGB1P09429 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
HMGB1P09429 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC6.32□□□□□ -1.4
HMGB1P09429 MTND5P31-201ENST00000419366 1374 ntBASIC6.31□□□□□ -1.4
HMGB1P09429 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
HMGB1P09429 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC6.31□□□□□ -1.4
HMGB1P09429 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC6.31□□□□□ -1.4
HMGB1P09429 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC6.31□□□□□ -1.4
HMGB1P09429 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC6.31□□□□□ -1.4
HMGB1P09429 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
HMGB1P09429 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HMGB1P09429 AC005294.1-201ENST00000355509 281 ntBASIC6.31□□□□□ -1.4
HMGB1P09429 MIR143-201ENST00000385300 106 ntBASIC6.31□□□□□ -1.4
HMGB1P09429 RNU6-1000P-201ENST00000391066 106 ntBASIC6.31□□□□□ -1.4
HMGB1P09429 MIR1250-201ENST00000408098 113 ntBASIC6.31□□□□□ -1.4
HMGB1P09429 AC009237.2-201ENST00000421358 284 ntBASIC6.31□□□□□ -1.4
HMGB1P09429 AC114973.1-201ENST00000429057 632 ntBASIC6.31□□□□□ -1.4
HMGB1P09429 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC6.31□□□□□ -1.4
HMGB1P09429 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
HMGB1P09429 MRPL35P2-201ENST00000448009 511 ntBASIC6.31□□□□□ -1.4
HMGB1P09429 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC6.31□□□□□ -1.4
HMGB1P09429 RPS20P32-201ENST00000456044 356 ntBASIC6.31□□□□□ -1.4
HMGB1P09429 AC023141.9-201ENST00000458734 412 ntBASIC6.31□□□□□ -1.4
HMGB1P09429 RN7SL717P-201ENST00000478343 297 ntBASIC6.31□□□□□ -1.4
HMGB1P09429 RPL15P21-201ENST00000495592 567 ntBASIC6.31□□□□□ -1.4
HMGB1P09429 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC6.31□□□□□ -1.4
HMGB1P09429 RNF138P1-201ENST00000502765 546 ntBASIC6.31□□□□□ -1.4
HMGB1P09429 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC6.31□□□□□ -1.4
HMGB1P09429 HMGB1P19-201ENST00000517578 577 ntBASIC6.31□□□□□ -1.4
HMGB1P09429 AC023632.1-201ENST00000518463 375 ntBASIC6.31□□□□□ -1.4
HMGB1P09429 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC6.31□□□□□ -1.4
HMGB1P09429 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC6.31□□□□□ -1.4
HMGB1P09429 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC6.31□□□□□ -1.4
HMGB1P09429 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC6.31□□□□□ -1.4
HMGB1P09429 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC6.31□□□□□ -1.4
HMGB1P09429 AL589674.2-201ENST00000604304 337 ntBASIC6.31□□□□□ -1.4
HMGB1P09429 AC009597.2-201ENST00000604659 592 ntBASIC6.31□□□□□ -1.4
HMGB1P09429 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC6.31□□□□□ -1.4
HMGB1P09429 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC6.31□□□□□ -1.4
HMGB1P09429 AC098679.5-201ENST00000624394 571 ntBASIC6.31□□□□□ -1.4
HMGB1P09429 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC6.31□□□□□ -1.4
HMGB1P09429 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
HMGB1P09429 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HMGB1P09429 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HMGB1P09429 HSPD1P14-201ENST00000432666 1618 ntBASIC6.31□□□□□ -1.4
HMGB1P09429 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HMGB1P09429 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC6.31□□□□□ -1.4
HMGB1P09429 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HMGB1P09429 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
HMGB1P09429 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
HMGB1P09429 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
HMGB1P09429 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC6.31□□□□□ -1.4
HMGB1P09429 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
HMGB1P09429 AL022311.1-201ENST00000623726 19416 ntBASIC6.3□□□□□ -1.4
HMGB1P09429 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HMGB1P09429 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HMGB1P09429 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HMGB1P09429 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
HMGB1P09429 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
HMGB1P09429 MTCYBP32-201ENST00000427945 1084 ntBASIC6.3□□□□□ -1.4
HMGB1P09429 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC6.3□□□□□ -1.4
HMGB1P09429 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
HMGB1P09429 PCNPP2-201ENST00000441651 455 ntBASIC6.3□□□□□ -1.4
HMGB1P09429 MTND2P39-201ENST00000457230 764 ntBASIC6.3□□□□□ -1.4
HMGB1P09429 RPL12P24-201ENST00000474907 486 ntBASIC6.3□□□□□ -1.4
HMGB1P09429 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC6.3□□□□□ -1.4
HMGB1P09429 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
HMGB1P09429 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC6.3□□□□□ -1.4
HMGB1P09429 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC6.3□□□□□ -1.4
HMGB1P09429 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC6.3□□□□□ -1.4
HMGB1P09429 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC6.3□□□□□ -1.4
HMGB1P09429 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC6.3□□□□□ -1.4
HMGB1P09429 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC6.3□□□□□ -1.4
HMGB1P09429 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC6.3□□□□□ -1.4
HMGB1P09429 MTCYBP13-201ENST00000578634 1093 ntBASIC6.3□□□□□ -1.4
HMGB1P09429 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC6.3□□□□□ -1.4
HMGB1P09429 AC011453.2-201ENST00000603737 729 ntBASIC6.3□□□□□ -1.4
HMGB1P09429 SUGT1P3-202ENST00000604259 383 ntBASIC6.3□□□□□ -1.4
HMGB1P09429 AL583856.2-201ENST00000606298 543 ntBASIC6.3□□□□□ -1.4
HMGB1P09429 MIR6839-201ENST00000620425 113 ntBASIC6.3□□□□□ -1.4
HMGB1P09429 AC026124.2-201ENST00000621847 656 ntBASIC6.3□□□□□ -1.4
HMGB1P09429 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC6.3□□□□□ -1.4
HMGB1P09429 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms