Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CDX2Q99626 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
CDX2Q99626 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CDX2Q99626 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CDX2Q99626 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC20.39■□□□□ 0.85
CDX2Q99626 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC20.39■□□□□ 0.85
CDX2Q99626 MIR4674-201ENST00000582457 87 ntBASIC20.39■□□□□ 0.85
CDX2Q99626 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.39■□□□□ 0.85
CDX2Q99626 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CDX2Q99626 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CDX2Q99626 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.39■□□□□ 0.85
CDX2Q99626 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CDX2Q99626 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CDX2Q99626 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CDX2Q99626 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CDX2Q99626 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CDX2Q99626 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CDX2Q99626 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC20.38■□□□□ 0.85
CDX2Q99626 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC20.38■□□□□ 0.85
CDX2Q99626 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC20.38■□□□□ 0.85
CDX2Q99626 AC140113.2-201ENST00000604370 208 ntBASIC20.38■□□□□ 0.85
CDX2Q99626 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC20.38■□□□□ 0.85
CDX2Q99626 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.38■□□□□ 0.85
CDX2Q99626 AL773604.1-201ENST00000617417 272 ntBASIC20.38■□□□□ 0.85
CDX2Q99626 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC20.38■□□□□ 0.85
CDX2Q99626 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CDX2Q99626 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CDX2Q99626 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.38■□□□□ 0.85
CDX2Q99626 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CDX2Q99626 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.38■□□□□ 0.85
CDX2Q99626 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CDX2Q99626 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
CDX2Q99626 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDX2Q99626 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CDX2Q99626 ECEL1P1-201ENST00000373592 1742 ntBASIC20.37■□□□□ 0.85
CDX2Q99626 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
CDX2Q99626 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CDX2Q99626 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDX2Q99626 ILF2-202ENST00000368681 726 ntTSL 2 BASIC20.37■□□□□ 0.85
CDX2Q99626 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC20.37■□□□□ 0.85
CDX2Q99626 RNPS1P1-201ENST00000507437 918 ntBASIC20.37■□□□□ 0.85
CDX2Q99626 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC20.37■□□□□ 0.85
CDX2Q99626 AC055717.3-201ENST00000622967 595 ntBASIC20.37■□□□□ 0.85
CDX2Q99626 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.37■□□□□ 0.85
CDX2Q99626 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
CDX2Q99626 TMEM179-206ENST00000616017 1645 ntBASIC20.37■□□□□ 0.85
CDX2Q99626 KRT8P41-201ENST00000533985 1514 ntBASIC20.37■□□□□ 0.85
CDX2Q99626 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDX2Q99626 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
CDX2Q99626 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC20.36■□□□□ 0.85
CDX2Q99626 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC20.36■□□□□ 0.85
CDX2Q99626 SAPCD2P3-201ENST00000455031 850 ntBASIC20.36■□□□□ 0.85
CDX2Q99626 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
CDX2Q99626 ABR-204ENST00000543210 1049 ntTSL 2 BASIC20.36■□□□□ 0.85
CDX2Q99626 AC074051.2-201ENST00000565115 352 ntBASIC20.36■□□□□ 0.85
CDX2Q99626 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CDX2Q99626 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC20.36■□□□□ 0.85
CDX2Q99626 TP73-AS1-207ENST00000624167 988 ntBASIC20.36■□□□□ 0.85
CDX2Q99626 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.36■□□□□ 0.85
CDX2Q99626 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.36■□□□□ 0.85
CDX2Q99626 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDX2Q99626 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC20.35■□□□□ 0.85
CDX2Q99626 AL117328.2-201ENST00000624617 1940 ntBASIC20.35■□□□□ 0.85
CDX2Q99626 PHGDH-210ENST00000641115 1638 ntBASIC20.35■□□□□ 0.85
CDX2Q99626 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.35■□□□□ 0.85
CDX2Q99626 BUB3-202ENST00000368859 667 ntTSL 3 BASIC20.35■□□□□ 0.85
CDX2Q99626 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CDX2Q99626 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
CDX2Q99626 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.35■□□□□ 0.85
CDX2Q99626 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CDX2Q99626 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC20.35■□□□□ 0.85
CDX2Q99626 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC20.35■□□□□ 0.85
CDX2Q99626 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
CDX2Q99626 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC20.35■□□□□ 0.85
CDX2Q99626 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
CDX2Q99626 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDX2Q99626 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDX2Q99626 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
CDX2Q99626 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.35■□□□□ 0.85
CDX2Q99626 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDX2Q99626 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDX2Q99626 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDX2Q99626 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDX2Q99626 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CDX2Q99626 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDX2Q99626 LINC01465-201ENST00000408887 1940 ntBASIC20.34■□□□□ 0.85
CDX2Q99626 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC20.34■□□□□ 0.85
CDX2Q99626 AF238378.1-201ENST00000526806 358 ntBASIC20.34■□□□□ 0.85
CDX2Q99626 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDX2Q99626 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC20.34■□□□□ 0.85
CDX2Q99626 AC024243.1-201ENST00000609234 778 ntBASIC20.34■□□□□ 0.85
CDX2Q99626 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDX2Q99626 C1orf229-201ENST00000623686 2258 ntBASIC20.34■□□□□ 0.85
CDX2Q99626 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDX2Q99626 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC20.34■□□□□ 0.85
CDX2Q99626 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.85
CDX2Q99626 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.33■□□□□ 0.85
CDX2Q99626 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CDX2Q99626 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDX2Q99626 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms