Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC28A1O00337 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC28A1O00337 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.7■□□□□ 0.58
SLC28A1O00337 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC28A1O00337 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC28A1O00337 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.7■□□□□ 0.58
SLC28A1O00337 AC141586.3-201ENST00000562166 1838 ntBASIC18.7■□□□□ 0.58
SLC28A1O00337 AC124283.5-201ENST00000624661 1809 ntBASIC18.7■□□□□ 0.58
SLC28A1O00337 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SLC28A1O00337 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SLC28A1O00337 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.69■□□□□ 0.58
SLC28A1O00337 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SLC28A1O00337 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SLC28A1O00337 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.69■□□□□ 0.58
SLC28A1O00337 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.69■□□□□ 0.58
SLC28A1O00337 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
SLC28A1O00337 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
SLC28A1O00337 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SLC28A1O00337 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SLC28A1O00337 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SLC28A1O00337 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SLC28A1O00337 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
SLC28A1O00337 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
SLC28A1O00337 AC097658.1-201ENST00000475555 843 ntBASIC18.69■□□□□ 0.58
SLC28A1O00337 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.69■□□□□ 0.58
SLC28A1O00337 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC18.69■□□□□ 0.58
SLC28A1O00337 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SLC28A1O00337 AL121906.2-201ENST00000621597 723 ntBASIC18.69■□□□□ 0.58
SLC28A1O00337 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SLC28A1O00337 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.69■□□□□ 0.58
SLC28A1O00337 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SLC28A1O00337 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.69■□□□□ 0.58
SLC28A1O00337 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SLC28A1O00337 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SLC28A1O00337 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SLC28A1O00337 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SLC28A1O00337 AC092368.3-202ENST00000574180 1591 ntBASIC18.68■□□□□ 0.58
SLC28A1O00337 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SLC28A1O00337 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.68■□□□□ 0.58
SLC28A1O00337 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SLC28A1O00337 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
SLC28A1O00337 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.68■□□□□ 0.58
SLC28A1O00337 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SLC28A1O00337 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SLC28A1O00337 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SLC28A1O00337 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC18.68■□□□□ 0.58
SLC28A1O00337 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.68■□□□□ 0.58
SLC28A1O00337 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
SLC28A1O00337 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.68■□□□□ 0.58
SLC28A1O00337 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.68■□□□□ 0.58
SLC28A1O00337 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.68■□□□□ 0.58
SLC28A1O00337 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.68■□□□□ 0.58
SLC28A1O00337 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.68■□□□□ 0.58
SLC28A1O00337 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.68■□□□□ 0.58
SLC28A1O00337 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.68■□□□□ 0.58
SLC28A1O00337 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.68■□□□□ 0.58
SLC28A1O00337 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.68■□□□□ 0.58
SLC28A1O00337 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SLC28A1O00337 HLA-B-256ENST00000639848 1089 ntBASIC18.68■□□□□ 0.58
SLC28A1O00337 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SLC28A1O00337 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SLC28A1O00337 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.68■□□□□ 0.58
SLC28A1O00337 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SLC28A1O00337 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.68■□□□□ 0.58
SLC28A1O00337 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SLC28A1O00337 AP006587.1-201ENST00000534129 1502 ntBASIC18.68■□□□□ 0.58
SLC28A1O00337 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SLC28A1O00337 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SLC28A1O00337 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SLC28A1O00337 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SLC28A1O00337 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SLC28A1O00337 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SLC28A1O00337 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SLC28A1O00337 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SLC28A1O00337 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.67■□□□□ 0.58
SLC28A1O00337 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SLC28A1O00337 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SLC28A1O00337 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SLC28A1O00337 TEX21P-204ENST00000641479 1693 ntBASIC18.67■□□□□ 0.58
SLC28A1O00337 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SLC28A1O00337 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SLC28A1O00337 AC093503.3-201ENST00000624917 2352 ntBASIC18.67■□□□□ 0.58
SLC28A1O00337 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.67■□□□□ 0.58
SLC28A1O00337 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SLC28A1O00337 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
SLC28A1O00337 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SLC28A1O00337 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18.67■□□□□ 0.58
SLC28A1O00337 NCF1B-203ENST00000435988 1254 ntBASIC18.67■□□□□ 0.58
SLC28A1O00337 GUSBP6-202ENST00000438529 1198 ntBASIC18.67■□□□□ 0.58
SLC28A1O00337 YBX1P10-201ENST00000444752 975 ntBASIC18.67■□□□□ 0.58
SLC28A1O00337 TSPY6P-201ENST00000448518 926 ntBASIC18.67■□□□□ 0.58
SLC28A1O00337 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.67■□□□□ 0.58
SLC28A1O00337 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.67■□□□□ 0.58
SLC28A1O00337 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC18.67■□□□□ 0.58
SLC28A1O00337 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.67■□□□□ 0.58
SLC28A1O00337 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SLC28A1O00337 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.67■□□□□ 0.58
SLC28A1O00337 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SLC28A1O00337 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
SLC28A1O00337 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms