Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC015795.1-201ENST00000513669 327 ntBASIC4.74□□□□□ -1.65
SIX2Q9NPC8 AC112198.4-201ENST00000515450 351 ntBASIC4.74□□□□□ -1.65
SIX2Q9NPC8 HMGB1P46-201ENST00000520062 610 ntBASIC4.74□□□□□ -1.65
SIX2Q9NPC8 AL121839.1-201ENST00000556233 1185 ntBASIC4.74□□□□□ -1.65
SIX2Q9NPC8 AC233266.2-201ENST00000567067 528 ntBASIC4.74□□□□□ -1.65
SIX2Q9NPC8 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.74□□□□□ -1.65
SIX2Q9NPC8 OR1AB1P-201ENST00000585564 761 ntBASIC4.74□□□□□ -1.65
SIX2Q9NPC8 MTATP6P2-201ENST00000603319 678 ntBASIC4.74□□□□□ -1.65
SIX2Q9NPC8 AC017076.1-201ENST00000607613 578 ntBASIC4.74□□□□□ -1.65
SIX2Q9NPC8 Mico1.1-201ENST00000611698 204 ntBASIC4.74□□□□□ -1.65
SIX2Q9NPC8 AL161616.1-201ENST00000611867 286 ntBASIC4.74□□□□□ -1.65
SIX2Q9NPC8 AC104763.3-201ENST00000613765 618 ntBASIC4.74□□□□□ -1.65
SIX2Q9NPC8 AL645927.2-201ENST00000618350 349 ntBASIC4.74□□□□□ -1.65
SIX2Q9NPC8 AC090772.4-201ENST00000623599 362 ntBASIC4.74□□□□□ -1.65
SIX2Q9NPC8 AP001002.2-201ENST00000625137 386 ntBASIC4.74□□□□□ -1.65
SIX2Q9NPC8 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC4.74□□□□□ -1.65
SIX2Q9NPC8 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.74□□□□□ -1.65
SIX2Q9NPC8 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC4.74□□□□□ -1.65
SIX2Q9NPC8 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.74□□□□□ -1.65
SIX2Q9NPC8 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.74□□□□□ -1.65
SIX2Q9NPC8 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SIX2Q9NPC8 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 OR4K15-201ENST00000305051 1216 ntBASIC4.73□□□□□ -1.65
SIX2Q9NPC8 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 MIR3065-201ENST00000390137 79 ntBASIC4.73□□□□□ -1.65
SIX2Q9NPC8 RPL23AP59-201ENST00000399415 461 ntBASIC4.73□□□□□ -1.65
SIX2Q9NPC8 RSL24D1P1-201ENST00000404972 493 ntBASIC4.73□□□□□ -1.65
SIX2Q9NPC8 Z86062.1-201ENST00000406773 777 ntBASIC4.73□□□□□ -1.65
SIX2Q9NPC8 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 SETP15-201ENST00000412724 337 ntBASIC4.73□□□□□ -1.65
SIX2Q9NPC8 TMSB10P2-201ENST00000416049 131 ntBASIC4.73□□□□□ -1.65
SIX2Q9NPC8 AC006065.1-201ENST00000422539 802 ntBASIC4.73□□□□□ -1.65
SIX2Q9NPC8 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 AL157884.3-201ENST00000448273 1184 ntBASIC4.73□□□□□ -1.65
SIX2Q9NPC8 ABCF2P2-201ENST00000450549 296 ntBASIC4.73□□□□□ -1.65
SIX2Q9NPC8 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 RNU6-415P-201ENST00000516252 97 ntBASIC4.73□□□□□ -1.65
SIX2Q9NPC8 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 OSBPL9P3-201ENST00000534523 595 ntBASIC4.73□□□□□ -1.65
SIX2Q9NPC8 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 RN7SL176P-201ENST00000580352 264 ntBASIC4.73□□□□□ -1.65
SIX2Q9NPC8 AC069061.3-201ENST00000582254 823 ntBASIC4.73□□□□□ -1.65
SIX2Q9NPC8 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 AC079587.1-201ENST00000603846 277 ntBASIC4.73□□□□□ -1.65
SIX2Q9NPC8 AC097504.2-201ENST00000608088 454 ntBASIC4.73□□□□□ -1.65
SIX2Q9NPC8 AL096803.3-201ENST00000609032 532 ntBASIC4.73□□□□□ -1.65
SIX2Q9NPC8 AC012409.3-201ENST00000611343 981 ntBASIC4.73□□□□□ -1.65
SIX2Q9NPC8 AC095038.2-201ENST00000621464 1070 ntBASIC4.73□□□□□ -1.65
SIX2Q9NPC8 AC009269.6-201ENST00000621778 588 ntBASIC4.73□□□□□ -1.65
SIX2Q9NPC8 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SIX2Q9NPC8 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC4.72□□□□□ -1.65
SIX2Q9NPC8 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
SIX2Q9NPC8 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
SIX2Q9NPC8 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.72□□□□□ -1.65
SIX2Q9NPC8 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.72□□□□□ -1.65
SIX2Q9NPC8 RNU6-1251P-201ENST00000364502 107 ntBASIC4.72□□□□□ -1.65
SIX2Q9NPC8 SNORD66.1-201ENST00000391230 76 ntBASIC4.72□□□□□ -1.65
SIX2Q9NPC8 AL583835.1-201ENST00000399570 407 ntBASIC4.72□□□□□ -1.65
SIX2Q9NPC8 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.72□□□□□ -1.65
SIX2Q9NPC8 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC4.72□□□□□ -1.65
SIX2Q9NPC8 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.72□□□□□ -1.65
SIX2Q9NPC8 AC092570.3-201ENST00000420113 693 ntBASIC4.72□□□□□ -1.65
SIX2Q9NPC8 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC4.72□□□□□ -1.65
SIX2Q9NPC8 RPL23AP1-201ENST00000428990 471 ntBASIC4.72□□□□□ -1.65
SIX2Q9NPC8 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.72□□□□□ -1.65
SIX2Q9NPC8 GEMIN8P3-201ENST00000445417 720 ntBASIC4.72□□□□□ -1.65
SIX2Q9NPC8 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC4.72□□□□□ -1.65
SIX2Q9NPC8 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC4.72□□□□□ -1.65
SIX2Q9NPC8 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.72□□□□□ -1.65
SIX2Q9NPC8 RPL21P126-201ENST00000470049 478 ntBASIC4.72□□□□□ -1.65
SIX2Q9NPC8 AC231760.1-201ENST00000498002 260 ntBASIC4.72□□□□□ -1.65
SIX2Q9NPC8 HMGB1P3-201ENST00000502802 616 ntBASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 118.5 ms