Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
VPS13AQ96RL7 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS13AQ96RL7 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS13AQ96RL7 RPS4XP10-201ENST00000465034 731 ntBASIC3.98□□□□□ -1.77
VPS13AQ96RL7 RPS29P19-201ENST00000479709 171 ntBASIC3.98□□□□□ -1.77
VPS13AQ96RL7 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS13AQ96RL7 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS13AQ96RL7 AL137849.1-201ENST00000604767 169 ntBASIC3.98□□□□□ -1.77
VPS13AQ96RL7 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS13AQ96RL7 AC074029.4-201ENST00000624796 1859 ntBASIC3.98□□□□□ -1.77
VPS13AQ96RL7 AP1G1-201ENST00000299980 6969 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
VPS13AQ96RL7 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
VPS13AQ96RL7 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
VPS13AQ96RL7 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
VPS13AQ96RL7 ABCC2-202ENST00000370449 5312 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
VPS13AQ96RL7 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS13AQ96RL7 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC3.98□□□□□ -1.77
VPS13AQ96RL7 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
VPS13AQ96RL7 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS13AQ96RL7 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
VPS13AQ96RL7 AL034370.1-201ENST00000397254 1590 ntBASIC3.98□□□□□ -1.77
VPS13AQ96RL7 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
VPS13AQ96RL7 OR6K3-202ENST00000368146 996 ntBASIC3.98□□□□□ -1.77
VPS13AQ96RL7 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS13AQ96RL7 AC020893.1-201ENST00000502452 580 ntBASIC3.98□□□□□ -1.77
VPS13AQ96RL7 AC111000.6-201ENST00000514471 709 ntBASIC3.98□□□□□ -1.77
VPS13AQ96RL7 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS13AQ96RL7 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS13AQ96RL7 ZRANB3-202ENST00000401392 6820 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS13AQ96RL7 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS13AQ96RL7 DIO2-201ENST00000422005 6272 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS13AQ96RL7 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS13AQ96RL7 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
VPS13AQ96RL7 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS13AQ96RL7 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS13AQ96RL7 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS13AQ96RL7 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS13AQ96RL7 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
VPS13AQ96RL7 AC004938.1-201ENST00000438468 308 ntBASIC3.97□□□□□ -1.77
VPS13AQ96RL7 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS13AQ96RL7 AC007458.1-201ENST00000542812 373 ntBASIC3.97□□□□□ -1.77
VPS13AQ96RL7 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC3.97□□□□□ -1.77
VPS13AQ96RL7 AC091178.1-203ENST00000584586 279 ntBASIC3.97□□□□□ -1.77
VPS13AQ96RL7 MIR3922-201ENST00000585192 84 ntBASIC3.97□□□□□ -1.77
VPS13AQ96RL7 AC243312.2-201ENST00000623340 601 ntBASIC3.97□□□□□ -1.77
VPS13AQ96RL7 AC073530.2-201ENST00000623987 261 ntBASIC3.97□□□□□ -1.77
VPS13AQ96RL7 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS13AQ96RL7 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS13AQ96RL7 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS13AQ96RL7 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS13AQ96RL7 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS13AQ96RL7 AP001284.1-201ENST00000528393 2118 ntBASIC3.97□□□□□ -1.77
VPS13AQ96RL7 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
VPS13AQ96RL7 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS13AQ96RL7 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS13AQ96RL7 TEX41-206ENST00000432608 661 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS13AQ96RL7 RPL23AP46-201ENST00000438548 490 ntBASIC3.97□□□□□ -1.77
VPS13AQ96RL7 RPS3AP14-201ENST00000483907 780 ntBASIC3.97□□□□□ -1.77
VPS13AQ96RL7 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
VPS13AQ96RL7 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS13AQ96RL7 MIR7112-201ENST00000616126 65 ntBASIC3.97□□□□□ -1.77
VPS13AQ96RL7 LINC01109-201ENST00000603837 3081 ntBASIC3.97□□□□□ -1.77
VPS13AQ96RL7 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
VPS13AQ96RL7 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS13AQ96RL7 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
VPS13AQ96RL7 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
VPS13AQ96RL7 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
VPS13AQ96RL7 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC3.96□□□□□ -1.77
VPS13AQ96RL7 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC3.96□□□□□ -1.77
VPS13AQ96RL7 AC091516.1-201ENST00000549191 703 ntBASIC3.96□□□□□ -1.77
VPS13AQ96RL7 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.96□□□□□ -1.77
VPS13AQ96RL7 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.96□□□□□ -1.77
VPS13AQ96RL7 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC3.96□□□□□ -1.77
VPS13AQ96RL7 DOCK11P1-201ENST00000553480 5932 ntBASIC3.96□□□□□ -1.78
VPS13AQ96RL7 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.96□□□□□ -1.78
VPS13AQ96RL7 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
VPS13AQ96RL7 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
VPS13AQ96RL7 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
VPS13AQ96RL7 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
VPS13AQ96RL7 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC3.96□□□□□ -1.78
VPS13AQ96RL7 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
VPS13AQ96RL7 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC3.96□□□□□ -1.78
VPS13AQ96RL7 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.96□□□□□ -1.78
VPS13AQ96RL7 AC112206.1-201ENST00000468416 477 ntBASIC3.96□□□□□ -1.78
VPS13AQ96RL7 AC012158.1-204ENST00000483430 465 ntBASIC3.96□□□□□ -1.78
VPS13AQ96RL7 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC3.96□□□□□ -1.78
VPS13AQ96RL7 MTND1P6-201ENST00000523621 946 ntBASIC3.96□□□□□ -1.78
VPS13AQ96RL7 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
VPS13AQ96RL7 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC3.96□□□□□ -1.78
VPS13AQ96RL7 AC114878.2-201ENST00000604863 1251 ntBASIC3.96□□□□□ -1.78
VPS13AQ96RL7 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC3.96□□□□□ -1.78
VPS13AQ96RL7 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.96□□□□□ -1.78
VPS13AQ96RL7 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC3.96□□□□□ -1.78
VPS13AQ96RL7 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
VPS13AQ96RL7 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
VPS13AQ96RL7 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
VPS13AQ96RL7 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC3.96□□□□□ -1.78
VPS13AQ96RL7 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC3.96□□□□□ -1.78
VPS13AQ96RL7 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
VPS13AQ96RL7 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms