Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC6.29□□□□□ -1.4
SMC1BQ8NDV3 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 AL122126.1-201ENST00000546905 1318 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 AC125336.1-201ENST00000508893 2827 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 RALGAPA1P1-201ENST00000443361 6232 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 AL121768.1-201ENST00000613917 2544 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 OFD1P8Y-201ENST00000449148 1433 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 MIR133A2-201ENST00000347538 102 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 RNU6-1214P-201ENST00000363650 109 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 RNA5-8SP5-201ENST00000365304 152 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 U3.22-201ENST00000391120 215 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 AC015977.1-201ENST00000418887 292 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 MTND2P18-201ENST00000419962 1030 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 C1DP1-201ENST00000426049 402 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 AC007559.1-201ENST00000428736 355 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 RBMY2TP-201ENST00000451162 947 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 AURKAPS2-201ENST00000454983 333 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 CDC42P1-201ENST00000456658 548 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 AC010326.1-201ENST00000462726 602 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 RPL23AP37-201ENST00000479658 549 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 AC111193.1-201ENST00000504097 155 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 PRELID3BP4-201ENST00000515476 571 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 Y_RNA.688-201ENST00000516565 95 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 SETP1-201ENST00000556014 845 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 AC125494.3-201ENST00000602759 455 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 AC024257.5-201ENST00000612739 531 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 RNA5SP439-201ENST00000617595 124 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 AC021106.3-201ENST00000623925 531 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 AL121594.5-201ENST00000631724 573 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 ZNF663P-202ENST00000641770 1131 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 AC092747.4-201ENST00000620519 1861 ntBASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC6.28□□□□□ -1.4
SMC1BQ8NDV3 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 AP000473.2-201ENST00000602659 1537 ntBASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 RNU1-87P-201ENST00000363727 170 ntBASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 AC025750.1-201ENST00000399891 379 ntBASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 Z97832.1-201ENST00000402490 328 ntBASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 TCEA1P4-201ENST00000415066 844 ntBASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 AL008987.1-201ENST00000415528 237 ntBASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 MRPL35P4-201ENST00000453682 566 ntBASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 RPS7P6-201ENST00000485777 579 ntBASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 AC091951.3-201ENST00000504093 246 ntBASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 HPRT1P2-201ENST00000505250 544 ntBASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 AC091860.1-201ENST00000505723 432 ntBASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SMC1BQ8NDV3 COX6B1P5-201ENST00000509843 249 ntBASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms