Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 ACTR3BP4-201ENST00000503033 1244 ntBASIC6.9□□□□□ -1.31
CUX1P39880 RN7SKP141-201ENST00000516167 338 ntBASIC6.9□□□□□ -1.31
CUX1P39880 PAICSP4-201ENST00000517543 1253 ntBASIC6.9□□□□□ -1.31
CUX1P39880 AC090151.1-201ENST00000520784 730 ntBASIC6.9□□□□□ -1.31
CUX1P39880 AC084757.4-201ENST00000616350 526 ntBASIC6.9□□□□□ -1.31
CUX1P39880 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC6.9□□□□□ -1.31
CUX1P39880 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC6.9□□□□□ -1.31
CUX1P39880 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC6.9□□□□□ -1.31
CUX1P39880 AC024560.2-201ENST00000507981 1497 ntBASIC6.89□□□□□ -1.31
CUX1P39880 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC6.89□□□□□ -1.31
CUX1P39880 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
CUX1P39880 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
CUX1P39880 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC6.89□□□□□ -1.31
CUX1P39880 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CUX1P39880 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
CUX1P39880 AC021242.1-201ENST00000507315 2035 ntBASIC6.89□□□□□ -1.31
CUX1P39880 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CUX1P39880 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CUX1P39880 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC6.89□□□□□ -1.31
CUX1P39880 AL590704.1-201ENST00000402856 794 ntBASIC6.89□□□□□ -1.31
CUX1P39880 MAP1LC3BP1-201ENST00000417653 379 ntBASIC6.89□□□□□ -1.31
CUX1P39880 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
CUX1P39880 FCF1P7-201ENST00000451185 558 ntBASIC6.89□□□□□ -1.31
CUX1P39880 AC092691.2-201ENST00000461787 803 ntBASIC6.89□□□□□ -1.31
CUX1P39880 ATP6V1G1P6-201ENST00000504007 334 ntBASIC6.89□□□□□ -1.31
CUX1P39880 IGKV2D-19-201ENST00000523346 262 ntBASIC6.89□□□□□ -1.31
CUX1P39880 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
CUX1P39880 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC6.89□□□□□ -1.31
CUX1P39880 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC6.89□□□□□ -1.31
CUX1P39880 MIR3200-201ENST00000580767 85 ntBASIC6.89□□□□□ -1.31
CUX1P39880 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC6.89□□□□□ -1.31
CUX1P39880 AC096577.2-201ENST00000611455 153 ntBASIC6.89□□□□□ -1.31
CUX1P39880 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
CUX1P39880 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC6.89□□□□□ -1.31
CUX1P39880 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CUX1P39880 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC6.88□□□□□ -1.31
CUX1P39880 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
CUX1P39880 AL731532.2-201ENST00000623542 1953 ntBASIC6.88□□□□□ -1.31
CUX1P39880 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC6.88□□□□□ -1.31
CUX1P39880 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC6.88□□□□□ -1.31
CUX1P39880 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC6.88□□□□□ -1.31
CUX1P39880 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC6.88□□□□□ -1.31
CUX1P39880 AL139099.1-201ENST00000497398 403 ntBASIC6.88□□□□□ -1.31
CUX1P39880 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC6.88□□□□□ -1.31
CUX1P39880 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC6.88□□□□□ -1.31
CUX1P39880 NDUFA5P2-201ENST00000519723 344 ntBASIC6.88□□□□□ -1.31
CUX1P39880 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC6.88□□□□□ -1.31
CUX1P39880 AC027176.2-201ENST00000559166 746 ntBASIC6.88□□□□□ -1.31
CUX1P39880 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC6.88□□□□□ -1.31
CUX1P39880 CCT7-217ENST00000626868 249 ntTSL 5 BASIC6.88□□□□□ -1.31
CUX1P39880 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC6.88□□□□□ -1.31
CUX1P39880 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
CUX1P39880 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC6.88□□□□□ -1.31
CUX1P39880 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC6.88□□□□□ -1.31
CUX1P39880 AL049781.1-201ENST00000623195 3585 ntBASIC6.88□□□□□ -1.31
CUX1P39880 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
CUX1P39880 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
CUX1P39880 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC6.87□□□□□ -1.31
CUX1P39880 MIR200C-201ENST00000384980 68 ntBASIC6.87□□□□□ -1.31
CUX1P39880 ATP5F1P4-201ENST00000397288 746 ntBASIC6.87□□□□□ -1.31
CUX1P39880 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC6.87□□□□□ -1.31
CUX1P39880 RPL23AP25-201ENST00000430973 463 ntBASIC6.87□□□□□ -1.31
CUX1P39880 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC6.87□□□□□ -1.31
CUX1P39880 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC6.87□□□□□ -1.31
CUX1P39880 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC6.87□□□□□ -1.31
CUX1P39880 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
CUX1P39880 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
CUX1P39880 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
CUX1P39880 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC6.87□□□□□ -1.31
CUX1P39880 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC6.87□□□□□ -1.31
CUX1P39880 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
CUX1P39880 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
CUX1P39880 UBTFL3-201ENST00000418934 1024 ntBASIC6.86□□□□□ -1.31
CUX1P39880 RPL36AP10-201ENST00000421785 322 ntBASIC6.86□□□□□ -1.31
CUX1P39880 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC6.86□□□□□ -1.31
CUX1P39880 RPS27AP15-201ENST00000447672 466 ntBASIC6.86□□□□□ -1.31
CUX1P39880 UBTFL6-201ENST00000477929 1024 ntBASIC6.86□□□□□ -1.31
CUX1P39880 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC6.86□□□□□ -1.31
CUX1P39880 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC6.86□□□□□ -1.31
CUX1P39880 TRAPPC2P2-201ENST00000517589 409 ntBASIC6.86□□□□□ -1.31
CUX1P39880 AC005255.1-201ENST00000593748 216 ntBASIC6.86□□□□□ -1.31
CUX1P39880 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC6.86□□□□□ -1.31
CUX1P39880 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
CUX1P39880 AC004656.1-201ENST00000568479 4951 ntBASIC6.86□□□□□ -1.31
CUX1P39880 AP001273.1-201ENST00000624493 3152 ntBASIC6.86□□□□□ -1.31
CUX1P39880 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
CUX1P39880 MAPK10-286ENST00000641208 8747 ntBASIC6.86□□□□□ -1.31
CUX1P39880 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC6.86□□□□□ -1.31
CUX1P39880 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC6.86□□□□□ -1.31
CUX1P39880 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
CUX1P39880 U1.1-201ENST00000384101 164 ntBASIC6.86□□□□□ -1.31
CUX1P39880 MIR183-201ENST00000384958 110 ntBASIC6.86□□□□□ -1.31
CUX1P39880 AL358178.1-201ENST00000407698 397 ntBASIC6.86□□□□□ -1.31
CUX1P39880 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC6.86□□□□□ -1.31
CUX1P39880 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC6.86□□□□□ -1.31
CUX1P39880 RPL7P49-201ENST00000471402 708 ntBASIC6.86□□□□□ -1.31
CUX1P39880 RNU1-95P-201ENST00000516357 160 ntBASIC6.86□□□□□ -1.31
CUX1P39880 RNU1-128P-201ENST00000516704 160 ntBASIC6.86□□□□□ -1.31
CUX1P39880 SOD1P3-201ENST00000518682 454 ntBASIC6.86□□□□□ -1.31
CUX1P39880 PTS-202ENST00000524931 696 ntTSL 3 BASIC6.86□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms