Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SCN4AP35499 ZNF285B-201ENST00000561698 1767 ntBASIC5.1□□□□□ -1.59
SCN4AP35499 AC016588.2-201ENST00000632484 3021 ntBASIC5.1□□□□□ -1.59
SCN4AP35499 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
SCN4AP35499 RNU11-4P-201ENST00000391149 133 ntBASIC5.09□□□□□ -1.59
SCN4AP35499 UBE2Q2P12-201ENST00000414573 204 ntBASIC5.09□□□□□ -1.59
SCN4AP35499 AMMECR1LP1-201ENST00000415152 841 ntBASIC5.09□□□□□ -1.59
SCN4AP35499 CDY14P-201ENST00000431260 1014 ntBASIC5.09□□□□□ -1.59
SCN4AP35499 CDY12P-201ENST00000440679 1015 ntBASIC5.09□□□□□ -1.59
SCN4AP35499 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC5.09□□□□□ -1.59
SCN4AP35499 CDY13P-201ENST00000445813 1015 ntBASIC5.09□□□□□ -1.59
SCN4AP35499 CDY23P-201ENST00000451661 1014 ntBASIC5.09□□□□□ -1.59
SCN4AP35499 RPL23AP81-201ENST00000455252 467 ntBASIC5.09□□□□□ -1.59
SCN4AP35499 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC5.09□□□□□ -1.59
SCN4AP35499 ACTR3P3-201ENST00000480448 893 ntBASIC5.09□□□□□ -1.59
SCN4AP35499 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC5.09□□□□□ -1.59
SCN4AP35499 HMGB3P16-201ENST00000508037 287 ntBASIC5.09□□□□□ -1.59
SCN4AP35499 AC119751.5-201ENST00000514077 770 ntBASIC5.09□□□□□ -1.59
SCN4AP35499 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC5.09□□□□□ -1.59
SCN4AP35499 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC5.09□□□□□ -1.59
SCN4AP35499 AC093524.1-201ENST00000564266 1094 ntBASIC5.09□□□□□ -1.59
SCN4AP35499 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC5.09□□□□□ -1.59
SCN4AP35499 CCT7-217ENST00000626868 249 ntTSL 5 BASIC5.09□□□□□ -1.59
SCN4AP35499 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC5.09□□□□□ -1.59
SCN4AP35499 AP001157.1-201ENST00000550837 2339 ntBASIC5.09□□□□□ -1.59
SCN4AP35499 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
SCN4AP35499 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC5.09□□□□□ -1.59
SCN4AP35499 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SCN4AP35499 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
SCN4AP35499 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SCN4AP35499 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC5.09□□□□□ -1.6
SCN4AP35499 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
SCN4AP35499 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
SCN4AP35499 RNA5SP307-201ENST00000362863 116 ntBASIC5.09□□□□□ -1.6
SCN4AP35499 U8.11-201ENST00000384699 133 ntBASIC5.09□□□□□ -1.6
SCN4AP35499 U8.12-201ENST00000384701 133 ntBASIC5.09□□□□□ -1.6
SCN4AP35499 PTMAP5-201ENST00000393073 333 ntBASIC5.09□□□□□ -1.6
SCN4AP35499 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC5.09□□□□□ -1.6
SCN4AP35499 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC5.09□□□□□ -1.6
SCN4AP35499 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC5.09□□□□□ -1.6
SCN4AP35499 U8.18-201ENST00000459285 133 ntBASIC5.09□□□□□ -1.6
SCN4AP35499 AF213884.1-201ENST00000488102 463 ntBASIC5.09□□□□□ -1.6
SCN4AP35499 AC110792.1-201ENST00000491826 472 ntBASIC5.09□□□□□ -1.6
SCN4AP35499 FTH1P11-201ENST00000517577 551 ntBASIC5.09□□□□□ -1.6
SCN4AP35499 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC5.09□□□□□ -1.6
SCN4AP35499 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
SCN4AP35499 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
SCN4AP35499 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC5.09□□□□□ -1.6
SCN4AP35499 FAP-203ENST00000443424 2598 ntTSL 2 BASIC5.09□□□□□ -1.6
SCN4AP35499 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
SCN4AP35499 AL355852.1-201ENST00000454081 1771 ntBASIC5.08□□□□□ -1.6
SCN4AP35499 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
SCN4AP35499 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SCN4AP35499 LINC00561-201ENST00000565815 2738 ntBASIC5.08□□□□□ -1.6
SCN4AP35499 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC5.08□□□□□ -1.6
SCN4AP35499 EED-206ENST00000527888 1422 ntTSL 2 BASIC5.08□□□□□ -1.6
SCN4AP35499 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
SCN4AP35499 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SCN4AP35499 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC5.08□□□□□ -1.6
SCN4AP35499 PPIAP13-201ENST00000434706 478 ntBASIC5.08□□□□□ -1.6
SCN4AP35499 RHEBP2-201ENST00000450289 600 ntBASIC5.08□□□□□ -1.6
SCN4AP35499 NANOGP10-201ENST00000453325 895 ntBASIC5.08□□□□□ -1.6
SCN4AP35499 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SCN4AP35499 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC5.08□□□□□ -1.6
SCN4AP35499 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.08□□□□□ -1.6
SCN4AP35499 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.08□□□□□ -1.6
SCN4AP35499 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC5.08□□□□□ -1.6
SCN4AP35499 AC130352.1-201ENST00000602979 661 ntBASIC5.08□□□□□ -1.6
SCN4AP35499 AL354798.1-201ENST00000622505 329 ntBASIC5.08□□□□□ -1.6
SCN4AP35499 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
SCN4AP35499 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
SCN4AP35499 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SCN4AP35499 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SCN4AP35499 AP001002.1-201ENST00000625148 1513 ntBASIC5.08□□□□□ -1.6
SCN4AP35499 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SCN4AP35499 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
SCN4AP35499 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
SCN4AP35499 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC5.07□□□□□ -1.6
SCN4AP35499 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.07□□□□□ -1.6
SCN4AP35499 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SCN4AP35499 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
SCN4AP35499 RNU1-83P-201ENST00000363426 164 ntBASIC5.07□□□□□ -1.6
SCN4AP35499 RNU6-213P-201ENST00000384051 104 ntBASIC5.07□□□□□ -1.6
SCN4AP35499 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC5.07□□□□□ -1.6
SCN4AP35499 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.07□□□□□ -1.6
SCN4AP35499 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC5.07□□□□□ -1.6
SCN4AP35499 RPS20P21-201ENST00000466859 343 ntBASIC5.07□□□□□ -1.6
SCN4AP35499 GAPDHP36-201ENST00000480688 918 ntBASIC5.07□□□□□ -1.6
SCN4AP35499 ATP1B1P1-201ENST00000509767 915 ntBASIC5.07□□□□□ -1.6
SCN4AP35499 HSPE1P5-201ENST00000561489 272 ntBASIC5.07□□□□□ -1.6
SCN4AP35499 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC5.07□□□□□ -1.6
SCN4AP35499 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SCN4AP35499 AC005255.1-201ENST00000593748 216 ntBASIC5.07□□□□□ -1.6
SCN4AP35499 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SCN4AP35499 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.07□□□□□ -1.6
SCN4AP35499 CASC19-204ENST00000641001 2055 ntBASIC5.07□□□□□ -1.6
SCN4AP35499 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.07□□□□□ -1.6
SCN4AP35499 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SCN4AP35499 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.07□□□□□ -1.6
SCN4AP35499 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms