Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC6.16□□□□□ -1.42
COL8A1P27658 Z99129.4-201ENST00000624649 2435 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 AL136981.1-203ENST00000451452 3844 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 AC068490.1-202ENST00000637384 3185 ntTSL 5 BASIC6.16□□□□□ -1.42
COL8A1P27658 ERCC6-202ENST00000374127 1782 ntBASIC6.16□□□□□ -1.42
COL8A1P27658 OR4Q3-202ENST00000642117 2165 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
COL8A1P27658 DYRK1A-201ENST00000338785 5498 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL8A1P27658 ZNF271P-201ENST00000399070 5124 ntTSL 2 BASIC6.15□□□□□ -1.42
COL8A1P27658 NXT2-203ENST00000372106 2562 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL8A1P27658 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL8A1P27658 UNC5D-201ENST00000287272 8662 ntTSL 5 BASIC6.15□□□□□ -1.42
COL8A1P27658 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL8A1P27658 TDRKH-201ENST00000368822 3093 ntAPPRIS P2 TSL 5 BASIC6.15□□□□□ -1.42
COL8A1P27658 PPFIA2-202ENST00000407050 3903 ntTSL 2 BASIC6.15□□□□□ -1.42
COL8A1P27658 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL8A1P27658 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL8A1P27658 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC6.15□□□□□ -1.42
COL8A1P27658 GPR1-AS-201ENST00000623040 3708 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL8A1P27658 ENSA-204ENST00000356527 2546 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL8A1P27658 MAP3K20-AS1-203ENST00000423106 2538 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL8A1P27658 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL8A1P27658 CCR6-202ENST00000349984 2980 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL8A1P27658 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL8A1P27658 RNU6-769P-201ENST00000384407 104 ntBASIC6.15□□□□□ -1.42
COL8A1P27658 RPA3-204ENST00000406109 434 ntTSL 3 BASIC6.15□□□□□ -1.42
COL8A1P27658 AP000534.2-201ENST00000412729 568 ntBASIC6.15□□□□□ -1.42
COL8A1P27658 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC6.15□□□□□ -1.42
COL8A1P27658 METTL15P3-201ENST00000415522 1221 ntBASIC6.15□□□□□ -1.42
COL8A1P27658 SLC35E1P1-201ENST00000419313 864 ntBASIC6.15□□□□□ -1.42
COL8A1P27658 COX6CP17-201ENST00000421389 185 ntBASIC6.15□□□□□ -1.42
COL8A1P27658 AC139712.2-201ENST00000424302 339 ntBASIC6.15□□□□□ -1.42
COL8A1P27658 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC6.15□□□□□ -1.42
COL8A1P27658 AL158073.1-201ENST00000426848 1104 ntBASIC6.15□□□□□ -1.42
COL8A1P27658 AC096677.2-201ENST00000430471 598 ntTSL 5 BASIC6.15□□□□□ -1.42
COL8A1P27658 HMGB3P10-201ENST00000434734 572 ntBASIC6.15□□□□□ -1.42
COL8A1P27658 LSM1P1-201ENST00000438629 273 ntBASIC6.15□□□□□ -1.42
COL8A1P27658 AC074286.1-202ENST00000441205 567 ntTSL 5 BASIC6.15□□□□□ -1.42
COL8A1P27658 MTCO1P27-201ENST00000448269 226 ntBASIC6.15□□□□□ -1.42
COL8A1P27658 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC6.15□□□□□ -1.42
COL8A1P27658 MEMO1P3-201ENST00000459811 302 ntBASIC6.15□□□□□ -1.42
COL8A1P27658 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC6.15□□□□□ -1.42
COL8A1P27658 RPL7P22-201ENST00000466005 733 ntBASIC6.15□□□□□ -1.42
COL8A1P27658 PFN1P6-201ENST00000476786 399 ntBASIC6.15□□□□□ -1.42
COL8A1P27658 RN7SL88P-201ENST00000480166 299 ntBASIC6.15□□□□□ -1.42
COL8A1P27658 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC6.15□□□□□ -1.42
COL8A1P27658 AC093664.1-201ENST00000511779 289 ntBASIC6.15□□□□□ -1.42
COL8A1P27658 RNU6-583P-201ENST00000516012 92 ntBASIC6.15□□□□□ -1.42
COL8A1P27658 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC6.15□□□□□ -1.42
COL8A1P27658 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC6.15□□□□□ -1.42
COL8A1P27658 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC6.15□□□□□ -1.42
COL8A1P27658 AP003072.2-201ENST00000527756 676 ntBASIC6.15□□□□□ -1.42
COL8A1P27658 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC6.15□□□□□ -1.42
COL8A1P27658 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC6.15□□□□□ -1.42
COL8A1P27658 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC6.15□□□□□ -1.42
COL8A1P27658 AC051619.2-201ENST00000559063 397 ntBASIC6.15□□□□□ -1.42
COL8A1P27658 AC138811.1-201ENST00000569096 361 ntTSL 3 BASIC6.15□□□□□ -1.42
COL8A1P27658 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC6.15□□□□□ -1.42
COL8A1P27658 SSX2B-202ENST00000596480 1291 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL8A1P27658 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC6.15□□□□□ -1.42
COL8A1P27658 XIST-210ENST00000602863 775 ntTSL 3 BASIC6.15□□□□□ -1.42
COL8A1P27658 SNX29P2-204ENST00000603801 875 ntBASIC6.15□□□□□ -1.42
COL8A1P27658 AL136097.3-201ENST00000611097 505 ntBASIC6.15□□□□□ -1.42
COL8A1P27658 AL096712.1-201ENST00000614561 159 ntBASIC6.15□□□□□ -1.42
COL8A1P27658 AC119674.1-212ENST00000641155 993 ntBASIC6.15□□□□□ -1.42
COL8A1P27658 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL8A1P27658 AL359091.1-201ENST00000449048 1734 ntBASIC6.15□□□□□ -1.42
COL8A1P27658 STOM-201ENST00000286713 3010 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL8A1P27658 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL8A1P27658 ASNSP3-201ENST00000451989 1306 ntBASIC6.15□□□□□ -1.43
COL8A1P27658 SLC24A1-209ENST00000537259 3983 ntAPPRIS ALT2 TSL 2 BASIC6.15□□□□□ -1.43
COL8A1P27658 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.43
COL8A1P27658 AL049647.1-201ENST00000319682 1789 ntTSL 2 BASIC6.15□□□□□ -1.43
COL8A1P27658 SEC31A-207ENST00000443462 4042 ntTSL 2 BASIC6.15□□□□□ -1.43
COL8A1P27658 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
COL8A1P27658 AL512662.1-201ENST00000624850 2251 ntBASIC6.15□□□□□ -1.43
COL8A1P27658 C3orf30-201ENST00000295622 1814 ntAPPRIS P2 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL8A1P27658 OR2L13-203ENST00000641893 1817 ntAPPRIS P1 BASIC6.15□□□□□ -1.43
COL8A1P27658 EEF1A1P26-201ENST00000458319 1363 ntBASIC6.15□□□□□ -1.43
COL8A1P27658 LINC01588-202ENST00000528300 3208 ntTSL 2 BASIC6.15□□□□□ -1.43
COL8A1P27658 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
COL8A1P27658 LDAH-209ENST00000440866 3728 ntTSL 2 BASIC6.15□□□□□ -1.43
COL8A1P27658 STK4-207ENST00000499879 6161 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
COL8A1P27658 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
COL8A1P27658 BRD7P1-201ENST00000557705 1915 ntBASIC6.15□□□□□ -1.43
COL8A1P27658 ACSL5-203ENST00000356116 3353 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
COL8A1P27658 AP004289.2-201ENST00000444413 1457 ntBASIC6.15□□□□□ -1.43
COL8A1P27658 CDY2B-201ENST00000382867 1961 ntAPPRIS ALT1 BASIC6.15□□□□□ -1.43
COL8A1P27658 DDX18P6-201ENST00000450119 1997 ntBASIC6.15□□□□□ -1.43
COL8A1P27658 ZNF189-202ENST00000339664 3021 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
COL8A1P27658 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC6.15□□□□□ -1.43
COL8A1P27658 IL1RL1-203ENST00000404917 3571 ntTSL 2 BASIC6.14□□□□□ -1.43
COL8A1P27658 UTY-216ENST00000624098 3636 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL8A1P27658 CEP41-213ENST00000489512 3161 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL8A1P27658 MAML2-202ENST00000618849 3154 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL8A1P27658 KIAA1549L-202ENST00000321505 11678 ntAPPRIS P2 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL8A1P27658 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL8A1P27658 SCML1-203ENST00000380045 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL8A1P27658 SIRPB1-205ENST00000381605 3241 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL8A1P27658 CDK15-201ENST00000260967 1635 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL8A1P27658 FHL1-216ENST00000535737 2325 ntTSL 3 BASIC6.14□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms