Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.24□□□□□ -1.73
SDC1P18827 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC4.24□□□□□ -1.73
SDC1P18827 AC073648.4-201ENST00000442655 781 ntBASIC4.24□□□□□ -1.73
SDC1P18827 RPL7L1P1-201ENST00000448259 785 ntBASIC4.24□□□□□ -1.73
SDC1P18827 MTND2P25-201ENST00000449028 610 ntBASIC4.24□□□□□ -1.73
SDC1P18827 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC4.24□□□□□ -1.73
SDC1P18827 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC4.24□□□□□ -1.73
SDC1P18827 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC4.24□□□□□ -1.73
SDC1P18827 RPS26P28-201ENST00000470806 348 ntBASIC4.24□□□□□ -1.73
SDC1P18827 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC4.24□□□□□ -1.73
SDC1P18827 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC4.24□□□□□ -1.73
SDC1P18827 CDH12P2-201ENST00000504393 298 ntBASIC4.24□□□□□ -1.73
SDC1P18827 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.24□□□□□ -1.73
SDC1P18827 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.24□□□□□ -1.73
SDC1P18827 AC125612.1-201ENST00000547580 377 ntBASIC4.24□□□□□ -1.73
SDC1P18827 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.24□□□□□ -1.73
SDC1P18827 MIR4436B2-201ENST00000581415 91 ntBASIC4.24□□□□□ -1.73
SDC1P18827 RN7SL690P-201ENST00000582087 240 ntBASIC4.24□□□□□ -1.73
SDC1P18827 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.24□□□□□ -1.73
SDC1P18827 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC4.24□□□□□ -1.73
SDC1P18827 MIR4436B1-201ENST00000583272 91 ntBASIC4.24□□□□□ -1.73
SDC1P18827 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC4.24□□□□□ -1.73
SDC1P18827 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.24□□□□□ -1.73
SDC1P18827 AC124856.1-201ENST00000600819 896 ntBASIC4.24□□□□□ -1.73
SDC1P18827 AC040174.2-201ENST00000602701 465 ntBASIC4.24□□□□□ -1.73
SDC1P18827 AL137072.1-201ENST00000603444 466 ntBASIC4.24□□□□□ -1.73
SDC1P18827 MIR6891-201ENST00000618788 93 ntBASIC4.24□□□□□ -1.73
SDC1P18827 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.24□□□□□ -1.73
SDC1P18827 LINC01808-202ENST00000641680 1116 ntBASIC4.24□□□□□ -1.73
SDC1P18827 AL592182.3-201ENST00000642132 3304 ntBASIC4.24□□□□□ -1.73
SDC1P18827 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SDC1P18827 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SDC1P18827 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SDC1P18827 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SDC1P18827 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
SDC1P18827 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.23□□□□□ -1.73
SDC1P18827 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
SDC1P18827 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.23□□□□□ -1.73
SDC1P18827 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC4.23□□□□□ -1.73
SDC1P18827 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.23□□□□□ -1.73
SDC1P18827 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC4.23□□□□□ -1.73
SDC1P18827 AC073335.1-201ENST00000427776 363 ntBASIC4.23□□□□□ -1.73
SDC1P18827 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC4.23□□□□□ -1.73
SDC1P18827 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.23□□□□□ -1.73
SDC1P18827 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.23□□□□□ -1.73
SDC1P18827 ARL4AP4-201ENST00000434170 518 ntBASIC4.23□□□□□ -1.73
SDC1P18827 CACYBPP1-201ENST00000438592 684 ntBASIC4.23□□□□□ -1.73
SDC1P18827 UBE2V1P3-201ENST00000439651 417 ntBASIC4.23□□□□□ -1.73
SDC1P18827 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SDC1P18827 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC4.23□□□□□ -1.73
SDC1P18827 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC4.23□□□□□ -1.73
SDC1P18827 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC4.23□□□□□ -1.73
SDC1P18827 CEACAMP6-201ENST00000452007 574 ntBASIC4.23□□□□□ -1.73
SDC1P18827 RPS27AP17-201ENST00000463344 455 ntBASIC4.23□□□□□ -1.73
SDC1P18827 AC006967.1-201ENST00000467608 589 ntBASIC4.23□□□□□ -1.73
SDC1P18827 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.23□□□□□ -1.73
SDC1P18827 RNA5SP497-201ENST00000516081 97 ntBASIC4.23□□□□□ -1.73
SDC1P18827 IGKV1-32-201ENST00000519290 311 ntBASIC4.23□□□□□ -1.73
SDC1P18827 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC4.23□□□□□ -1.73
SDC1P18827 AC134698.5-201ENST00000519444 336 ntBASIC4.23□□□□□ -1.73
SDC1P18827 AP003168.1-201ENST00000530091 307 ntBASIC4.23□□□□□ -1.73
SDC1P18827 AP001781.1-201ENST00000530977 207 ntBASIC4.23□□□□□ -1.73
SDC1P18827 C1GALT1P1-201ENST00000548895 1089 ntBASIC4.23□□□□□ -1.73
SDC1P18827 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.23□□□□□ -1.73
SDC1P18827 MTND6P33-201ENST00000571794 183 ntBASIC4.23□□□□□ -1.73
SDC1P18827 AL121834.1-201ENST00000572284 509 ntBASIC4.23□□□□□ -1.73
SDC1P18827 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC4.23□□□□□ -1.73
SDC1P18827 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC4.23□□□□□ -1.73
SDC1P18827 AC005034.4-201ENST00000603612 899 ntBASIC4.23□□□□□ -1.73
SDC1P18827 FAM25E-202ENST00000608562 189 ntBASIC4.23□□□□□ -1.73
SDC1P18827 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC4.23□□□□□ -1.73
SDC1P18827 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC4.23□□□□□ -1.73
SDC1P18827 WDR75-207ENST00000631047 270 ntTSL 5 BASIC4.23□□□□□ -1.73
SDC1P18827 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
SDC1P18827 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.23□□□□□ -1.73
SDC1P18827 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.23□□□□□ -1.73
SDC1P18827 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
SDC1P18827 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SDC1P18827 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SDC1P18827 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SDC1P18827 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.22□□□□□ -1.73
SDC1P18827 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SDC1P18827 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC4.22□□□□□ -1.73
SDC1P18827 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SDC1P18827 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SDC1P18827 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
SDC1P18827 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SDC1P18827 RNU1-108P-201ENST00000362556 161 ntBASIC4.22□□□□□ -1.73
SDC1P18827 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.22□□□□□ -1.73
SDC1P18827 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC4.22□□□□□ -1.73
SDC1P18827 USP9YP19-201ENST00000412165 485 ntBASIC4.22□□□□□ -1.73
SDC1P18827 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC4.22□□□□□ -1.73
SDC1P18827 RPS20P14-201ENST00000412545 360 ntBASIC4.22□□□□□ -1.73
SDC1P18827 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC4.22□□□□□ -1.73
SDC1P18827 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC4.22□□□□□ -1.73
SDC1P18827 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC4.22□□□□□ -1.73
SDC1P18827 RPL12P3-201ENST00000440080 396 ntBASIC4.22□□□□□ -1.73
SDC1P18827 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC4.22□□□□□ -1.73
SDC1P18827 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC4.22□□□□□ -1.73
SDC1P18827 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms