Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
CXCL1P09341 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CXCL1P09341 MFSD8-216ENST00000641147 4009 ntBASIC3.3□□□□□ -1.88
CXCL1P09341 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CXCL1P09341 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CXCL1P09341 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC3.3□□□□□ -1.88
CXCL1P09341 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CXCL1P09341 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CXCL1P09341 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.3□□□□□ -1.88
CXCL1P09341 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
CXCL1P09341 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC3.3□□□□□ -1.88
CXCL1P09341 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
CXCL1P09341 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
CXCL1P09341 U3.25-201ENST00000391209 220 ntBASIC3.3□□□□□ -1.88
CXCL1P09341 HMGN2P8-201ENST00000391458 268 ntBASIC3.3□□□□□ -1.88
CXCL1P09341 CHMP1B2P-201ENST00000399581 597 ntBASIC3.3□□□□□ -1.88
CXCL1P09341 RNU6ATAC7P-201ENST00000408111 127 ntBASIC3.3□□□□□ -1.88
CXCL1P09341 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.3□□□□□ -1.88
CXCL1P09341 BX510359.2-201ENST00000417920 305 ntBASIC3.3□□□□□ -1.88
CXCL1P09341 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC3.3□□□□□ -1.88
CXCL1P09341 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.3□□□□□ -1.88
CXCL1P09341 NRBF2P3-201ENST00000432731 865 ntBASIC3.3□□□□□ -1.88
CXCL1P09341 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CXCL1P09341 RPL12P46-201ENST00000436610 195 ntBASIC3.3□□□□□ -1.88
CXCL1P09341 AC016831.4-201ENST00000438302 307 ntBASIC3.3□□□□□ -1.88
CXCL1P09341 FHP1-201ENST00000442741 703 ntBASIC3.3□□□□□ -1.88
CXCL1P09341 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC3.3□□□□□ -1.88
CXCL1P09341 RPS18P6-201ENST00000476880 458 ntBASIC3.3□□□□□ -1.88
CXCL1P09341 AC037198.2-201ENST00000478845 733 ntBASIC3.3□□□□□ -1.88
CXCL1P09341 AC092045.1-201ENST00000495716 1231 ntBASIC3.3□□□□□ -1.88
CXCL1P09341 NIPA2P2-201ENST00000496376 1083 ntBASIC3.3□□□□□ -1.88
CXCL1P09341 AC005798.1-201ENST00000513715 387 ntBASIC3.3□□□□□ -1.88
CXCL1P09341 RN7SKP66-201ENST00000516681 231 ntBASIC3.3□□□□□ -1.88
CXCL1P09341 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC3.3□□□□□ -1.88
CXCL1P09341 AC040934.1-201ENST00000523101 513 ntTSL 2 BASIC3.3□□□□□ -1.88
CXCL1P09341 MORF4L1P3-201ENST00000525966 950 ntBASIC3.3□□□□□ -1.88
CXCL1P09341 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC3.3□□□□□ -1.88
CXCL1P09341 GCSHP4-201ENST00000538792 439 ntBASIC3.3□□□□□ -1.88
CXCL1P09341 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.3□□□□□ -1.88
CXCL1P09341 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC3.3□□□□□ -1.88
CXCL1P09341 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC3.3□□□□□ -1.88
CXCL1P09341 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC3.3□□□□□ -1.88
CXCL1P09341 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC3.3□□□□□ -1.88
CXCL1P09341 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC3.3□□□□□ -1.88
CXCL1P09341 AL512356.3-201ENST00000623005 461 ntBASIC3.3□□□□□ -1.88
CXCL1P09341 AC244205.2-202ENST00000635781 342 ntBASIC3.3□□□□□ -1.88
CXCL1P09341 RMST-202ENST00000541282 2099 ntTSL 2 BASIC3.3□□□□□ -1.88
CXCL1P09341 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CXCL1P09341 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CXCL1P09341 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CXCL1P09341 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC3.29□□□□□ -1.88
CXCL1P09341 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC3.29□□□□□ -1.88
CXCL1P09341 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC3.29□□□□□ -1.88
CXCL1P09341 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.29□□□□□ -1.88
CXCL1P09341 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC3.29□□□□□ -1.88
CXCL1P09341 AL592437.2-201ENST00000421655 2434 ntBASIC3.29□□□□□ -1.88
CXCL1P09341 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
CXCL1P09341 RNU1-87P-201ENST00000363727 170 ntBASIC3.29□□□□□ -1.88
CXCL1P09341 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC3.29□□□□□ -1.88
CXCL1P09341 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC3.29□□□□□ -1.88
CXCL1P09341 MTND4LP13-201ENST00000425022 298 ntBASIC3.29□□□□□ -1.88
CXCL1P09341 MTCO1P54-201ENST00000430139 712 ntBASIC3.29□□□□□ -1.88
CXCL1P09341 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC3.29□□□□□ -1.88
CXCL1P09341 ATP5HP2-201ENST00000433885 485 ntBASIC3.29□□□□□ -1.88
CXCL1P09341 RAB9AP5-201ENST00000437794 597 ntBASIC3.29□□□□□ -1.88
CXCL1P09341 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CXCL1P09341 RAB9AP2-201ENST00000443911 597 ntBASIC3.29□□□□□ -1.88
CXCL1P09341 OR1H1P-201ENST00000448731 937 ntBASIC3.29□□□□□ -1.88
CXCL1P09341 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC3.29□□□□□ -1.88
CXCL1P09341 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC3.29□□□□□ -1.88
CXCL1P09341 AC010733.1-201ENST00000451515 401 ntBASIC3.29□□□□□ -1.88
CXCL1P09341 AC096741.1-201ENST00000472250 846 ntBASIC3.29□□□□□ -1.88
CXCL1P09341 BX284632.1-201ENST00000478218 541 ntBASIC3.29□□□□□ -1.88
CXCL1P09341 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.29□□□□□ -1.88
CXCL1P09341 HIGD1AP14-201ENST00000507617 282 ntBASIC3.29□□□□□ -1.88
CXCL1P09341 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CXCL1P09341 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC3.29□□□□□ -1.88
CXCL1P09341 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC3.29□□□□□ -1.88
CXCL1P09341 USP9YP5-201ENST00000511770 630 ntBASIC3.29□□□□□ -1.88
CXCL1P09341 AC007016.1-201ENST00000512110 244 ntBASIC3.29□□□□□ -1.88
CXCL1P09341 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC3.29□□□□□ -1.88
CXCL1P09341 IGKV2-38-201ENST00000517443 247 ntBASIC3.29□□□□□ -1.88
CXCL1P09341 IGHV3-32-201ENST00000519182 355 ntBASIC3.29□□□□□ -1.88
CXCL1P09341 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC3.29□□□□□ -1.88
CXCL1P09341 NOX4-213ENST00000531342 696 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CXCL1P09341 AC007424.1-203ENST00000554613 687 ntBASIC3.29□□□□□ -1.88
CXCL1P09341 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC3.29□□□□□ -1.88
CXCL1P09341 AC105036.1-201ENST00000566222 271 ntBASIC3.29□□□□□ -1.88
CXCL1P09341 AC018552.3-201ENST00000567416 561 ntBASIC3.29□□□□□ -1.88
CXCL1P09341 AC016180.1-201ENST00000567945 403 ntBASIC3.29□□□□□ -1.88
CXCL1P09341 AC069366.1-201ENST00000583159 838 ntBASIC3.29□□□□□ -1.88
CXCL1P09341 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC3.29□□□□□ -1.88
CXCL1P09341 AC020910.2-201ENST00000603635 610 ntBASIC3.29□□□□□ -1.88
CXCL1P09341 AL121612.2-201ENST00000612261 482 ntBASIC3.29□□□□□ -1.88
CXCL1P09341 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CXCL1P09341 AC067852.7-201ENST00000623270 535 ntBASIC3.29□□□□□ -1.88
CXCL1P09341 AC091905.4-201ENST00000623432 202 ntBASIC3.29□□□□□ -1.88
CXCL1P09341 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC3.29□□□□□ -1.88
CXCL1P09341 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC3.29□□□□□ -1.88
CXCL1P09341 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms