Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC5.35□□□□□ -1.55
VPS4BO75351 RNU6-599P-201ENST00000459383 107 ntBASIC5.35□□□□□ -1.55
VPS4BO75351 RNU6-1193P-201ENST00000459461 107 ntBASIC5.35□□□□□ -1.55
VPS4BO75351 RPL7P48-201ENST00000461513 746 ntBASIC5.35□□□□□ -1.55
VPS4BO75351 RN7SL860P-201ENST00000473738 223 ntBASIC5.35□□□□□ -1.55
VPS4BO75351 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
VPS4BO75351 AC084024.2-201ENST00000503480 791 ntBASIC5.35□□□□□ -1.55
VPS4BO75351 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC5.35□□□□□ -1.55
VPS4BO75351 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.35□□□□□ -1.55
VPS4BO75351 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC5.35□□□□□ -1.55
VPS4BO75351 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC5.35□□□□□ -1.55
VPS4BO75351 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC5.35□□□□□ -1.55
VPS4BO75351 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.35□□□□□ -1.55
VPS4BO75351 HSPE1P2-201ENST00000554777 306 ntBASIC5.35□□□□□ -1.55
VPS4BO75351 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC5.35□□□□□ -1.55
VPS4BO75351 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC5.35□□□□□ -1.55
VPS4BO75351 MTCYBP28-201ENST00000566728 1132 ntBASIC5.35□□□□□ -1.55
VPS4BO75351 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC5.35□□□□□ -1.55
VPS4BO75351 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC5.35□□□□□ -1.55
VPS4BO75351 NBR2-204ENST00000587322 63 ntBASIC5.35□□□□□ -1.55
VPS4BO75351 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.35□□□□□ -1.55
VPS4BO75351 AC092140.2-201ENST00000618027 521 ntBASIC5.35□□□□□ -1.55
VPS4BO75351 AC005840.5-201ENST00000619166 599 ntBASIC5.35□□□□□ -1.55
VPS4BO75351 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC5.35□□□□□ -1.55
VPS4BO75351 RNU6-368P-201ENST00000620928 107 ntBASIC5.35□□□□□ -1.55
VPS4BO75351 RNU6-538P-201ENST00000622329 107 ntBASIC5.35□□□□□ -1.55
VPS4BO75351 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC5.35□□□□□ -1.55
VPS4BO75351 AC099654.6-201ENST00000636487 512 ntBASIC5.35□□□□□ -1.55
VPS4BO75351 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
VPS4BO75351 AC087821.2-201ENST00000637086 450 ntBASIC5.35□□□□□ -1.55
VPS4BO75351 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
VPS4BO75351 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
VPS4BO75351 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
VPS4BO75351 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
VPS4BO75351 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
VPS4BO75351 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
VPS4BO75351 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
VPS4BO75351 MUC2-202ENST00000613187 4845 ntBASIC5.35□□□□□ -1.55
VPS4BO75351 AL078621.3-201ENST00000623707 2042 ntBASIC5.35□□□□□ -1.55
VPS4BO75351 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.35□□□□□ -1.55
VPS4BO75351 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
VPS4BO75351 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
VPS4BO75351 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
VPS4BO75351 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC5.34□□□□□ -1.55
VPS4BO75351 AC100871.1-201ENST00000507871 1456 ntBASIC5.34□□□□□ -1.55
VPS4BO75351 AL049737.1-201ENST00000413920 1403 ntBASIC5.34□□□□□ -1.55
VPS4BO75351 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.34□□□□□ -1.55
VPS4BO75351 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC5.34□□□□□ -1.55
VPS4BO75351 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
VPS4BO75351 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.34□□□□□ -1.55
VPS4BO75351 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
VPS4BO75351 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
VPS4BO75351 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
VPS4BO75351 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
VPS4BO75351 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
VPS4BO75351 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
VPS4BO75351 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
VPS4BO75351 RNU6-1339P-201ENST00000363574 91 ntBASIC5.34□□□□□ -1.55
VPS4BO75351 RNU6-560P-201ENST00000364007 108 ntBASIC5.34□□□□□ -1.55
VPS4BO75351 RNU6-707P-201ENST00000364647 95 ntBASIC5.34□□□□□ -1.55
VPS4BO75351 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
VPS4BO75351 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC5.34□□□□□ -1.55
VPS4BO75351 Y_RNA.465-201ENST00000384293 102 ntBASIC5.34□□□□□ -1.55
VPS4BO75351 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
VPS4BO75351 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC5.34□□□□□ -1.55
VPS4BO75351 AC093719.1-202ENST00000392735 373 ntBASIC5.34□□□□□ -1.55
VPS4BO75351 RN7SKP125-201ENST00000410481 302 ntBASIC5.34□□□□□ -1.55
VPS4BO75351 RN7SKP182-201ENST00000410772 298 ntBASIC5.34□□□□□ -1.55
VPS4BO75351 RNU6-575P-201ENST00000411326 105 ntBASIC5.34□□□□□ -1.55
VPS4BO75351 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC5.34□□□□□ -1.55
VPS4BO75351 SEPT2P1-201ENST00000419651 180 ntBASIC5.34□□□□□ -1.55
VPS4BO75351 GNG5P5-201ENST00000420444 220 ntBASIC5.34□□□□□ -1.55
VPS4BO75351 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC5.34□□□□□ -1.55
VPS4BO75351 AC092017.2-201ENST00000427600 362 ntBASIC5.34□□□□□ -1.55
VPS4BO75351 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.34□□□□□ -1.55
VPS4BO75351 AC012075.1-201ENST00000436549 580 ntBASIC5.34□□□□□ -1.55
VPS4BO75351 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC5.34□□□□□ -1.55
VPS4BO75351 RPL12P3-201ENST00000440080 396 ntBASIC5.34□□□□□ -1.55
VPS4BO75351 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC5.34□□□□□ -1.55
VPS4BO75351 ARL4AP3-201ENST00000441452 574 ntBASIC5.34□□□□□ -1.55
VPS4BO75351 MTND5P2-201ENST00000442927 1142 ntBASIC5.34□□□□□ -1.55
VPS4BO75351 AL935212.3-201ENST00000450729 284 ntBASIC5.34□□□□□ -1.55
VPS4BO75351 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC5.34□□□□□ -1.55
VPS4BO75351 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC5.34□□□□□ -1.55
VPS4BO75351 RN7SL172P-201ENST00000460535 303 ntBASIC5.34□□□□□ -1.55
VPS4BO75351 AC004453.1-201ENST00000487895 408 ntBASIC5.34□□□□□ -1.55
VPS4BO75351 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC5.34□□□□□ -1.55
VPS4BO75351 RPL15P21-201ENST00000495592 567 ntBASIC5.34□□□□□ -1.55
VPS4BO75351 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC5.34□□□□□ -1.55
VPS4BO75351 RPS24P16-201ENST00000497294 392 ntBASIC5.34□□□□□ -1.55
VPS4BO75351 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC5.34□□□□□ -1.55
VPS4BO75351 RPF2P2-201ENST00000504693 896 ntBASIC5.34□□□□□ -1.55
VPS4BO75351 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC5.34□□□□□ -1.55
VPS4BO75351 AC090819.1-201ENST00000523800 1111 ntBASIC5.34□□□□□ -1.55
VPS4BO75351 HMGB1P42-201ENST00000532126 553 ntBASIC5.34□□□□□ -1.55
VPS4BO75351 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
VPS4BO75351 DUXAP1-201ENST00000556632 463 ntBASIC5.34□□□□□ -1.55
VPS4BO75351 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.34□□□□□ -1.55
VPS4BO75351 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.55
VPS4BO75351 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC5.34□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms