Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AC091912.1-201ENST00000511351 248 ntBASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AC079064.1-201ENST00000528365 362 ntBASIC4.96□□□□□ -1.62
COL28A1Q2UY09 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AC005341.1-201ENST00000571086 708 ntBASIC4.96□□□□□ -1.62
COL28A1Q2UY09 MIR3667-201ENST00000581025 74 ntBASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AP000919.1-202ENST00000581139 1264 ntBASIC4.96□□□□□ -1.62
COL28A1Q2UY09 MIR4760-201ENST00000585040 80 ntBASIC4.96□□□□□ -1.62
COL28A1Q2UY09 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AP002906.1-201ENST00000603405 233 ntBASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AC099785.1-201ENST00000605697 437 ntBASIC4.96□□□□□ -1.62
COL28A1Q2UY09 MLECP1-201ENST00000615893 709 ntBASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 uc_338.7-201ENST00000621834 124 ntBASIC4.96□□□□□ -1.62
COL28A1Q2UY09 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AC093591.2-201ENST00000565254 3843 ntBASIC4.96□□□□□ -1.62
COL28A1Q2UY09 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 AC104118.1-201ENST00000607625 1589 ntBASIC4.95□□□□□ -1.62
COL28A1Q2UY09 AL353796.1-201ENST00000561542 3241 ntBASIC4.95□□□□□ -1.62
COL28A1Q2UY09 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 HSPA8P17-201ENST00000427029 1382 ntBASIC4.95□□□□□ -1.62
COL28A1Q2UY09 EEF1A1P36-201ENST00000427807 1351 ntBASIC4.95□□□□□ -1.62
COL28A1Q2UY09 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 AC093775.1-201ENST00000624154 1868 ntBASIC4.95□□□□□ -1.62
COL28A1Q2UY09 RNU5E-10P-201ENST00000363506 118 ntBASIC4.95□□□□□ -1.62
COL28A1Q2UY09 RNA5SP515-201ENST00000364570 118 ntBASIC4.95□□□□□ -1.62
COL28A1Q2UY09 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 RNU6-932P-201ENST00000391108 106 ntBASIC4.95□□□□□ -1.62
COL28A1Q2UY09 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 AC234779.1-201ENST00000425910 285 ntBASIC4.95□□□□□ -1.62
COL28A1Q2UY09 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 MTCO3P21-201ENST00000430791 643 ntBASIC4.95□□□□□ -1.62
COL28A1Q2UY09 RPL12P17-201ENST00000432393 498 ntBASIC4.95□□□□□ -1.62
COL28A1Q2UY09 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 GAPDHP25-201ENST00000447061 1001 ntBASIC4.95□□□□□ -1.62
COL28A1Q2UY09 AC022431.1-201ENST00000450941 438 ntBASIC4.95□□□□□ -1.62
COL28A1Q2UY09 Z95152.1-201ENST00000453556 656 ntBASIC4.95□□□□□ -1.62
COL28A1Q2UY09 CCNB1IP1P3-201ENST00000454702 829 ntBASIC4.95□□□□□ -1.62
COL28A1Q2UY09 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 snoU109.3-201ENST00000459477 145 ntBASIC4.95□□□□□ -1.62
COL28A1Q2UY09 AC092754.1-201ENST00000472975 479 ntBASIC4.95□□□□□ -1.62
COL28A1Q2UY09 HMGN2P25-201ENST00000486956 268 ntBASIC4.95□□□□□ -1.62
COL28A1Q2UY09 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 RNA5SP373-201ENST00000517271 95 ntBASIC4.95□□□□□ -1.62
COL28A1Q2UY09 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 CASC19-203ENST00000523510 575 ntTSL 3 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 AC118942.1-201ENST00000529674 1035 ntBASIC4.95□□□□□ -1.62
COL28A1Q2UY09 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 AC084824.1-201ENST00000550917 1005 ntBASIC4.95□□□□□ -1.62
COL28A1Q2UY09 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 AL391358.1-201ENST00000605342 190 ntBASIC4.95□□□□□ -1.62
COL28A1Q2UY09 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 MIR7973-1-201ENST00000614683 76 ntBASIC4.95□□□□□ -1.62
COL28A1Q2UY09 AC073569.3-201ENST00000619055 682 ntBASIC4.95□□□□□ -1.62
COL28A1Q2UY09 AC006840.1-201ENST00000623069 542 ntBASIC4.95□□□□□ -1.62
COL28A1Q2UY09 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL28A1Q2UY09 DDX18P4-201ENST00000511690 1966 ntBASIC4.95□□□□□ -1.62
COL28A1Q2UY09 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL28A1Q2UY09 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC4.94□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms