Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ENSA-211ENST00000503345 793 ntTSL 3 BASIC4.57□□□□□ -1.68
COL4A4P53420 AC010460.1-201ENST00000507087 466 ntBASIC4.57□□□□□ -1.68
COL4A4P53420 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.57□□□□□ -1.68
COL4A4P53420 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC4.57□□□□□ -1.68
COL4A4P53420 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC4.57□□□□□ -1.68
COL4A4P53420 RPL21P7-201ENST00000557463 483 ntBASIC4.57□□□□□ -1.68
COL4A4P53420 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC4.57□□□□□ -1.68
COL4A4P53420 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC4.57□□□□□ -1.68
COL4A4P53420 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC4.57□□□□□ -1.68
COL4A4P53420 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC4.57□□□□□ -1.68
COL4A4P53420 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.57□□□□□ -1.68
COL4A4P53420 AC009093.8-201ENST00000641769 292 ntBASIC4.57□□□□□ -1.68
COL4A4P53420 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL4A4P53420 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL4A4P53420 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.57□□□□□ -1.68
COL4A4P53420 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC4.56□□□□□ -1.68
COL4A4P53420 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL4A4P53420 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL4A4P53420 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC4.56□□□□□ -1.68
COL4A4P53420 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL4A4P53420 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL4A4P53420 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.56□□□□□ -1.68
COL4A4P53420 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL4A4P53420 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL4A4P53420 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL4A4P53420 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL4A4P53420 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC4.56□□□□□ -1.68
COL4A4P53420 STAG2-201ENST00000218089 5218 ntAPPRIS ALT1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL4A4P53420 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
COL4A4P53420 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL4A4P53420 RN7SKP186-201ENST00000365371 303 ntBASIC4.56□□□□□ -1.68
COL4A4P53420 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.56□□□□□ -1.68
COL4A4P53420 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC4.56□□□□□ -1.68
COL4A4P53420 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL4A4P53420 AC115285.1-201ENST00000424879 736 ntBASIC4.56□□□□□ -1.68
COL4A4P53420 OR8F1P-201ENST00000425243 930 ntBASIC4.56□□□□□ -1.68
COL4A4P53420 MTCO1P54-201ENST00000430139 712 ntBASIC4.56□□□□□ -1.68
COL4A4P53420 AL050321.1-201ENST00000432363 400 ntBASIC4.56□□□□□ -1.68
COL4A4P53420 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL4A4P53420 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC4.56□□□□□ -1.68
COL4A4P53420 ACTR3BP4-201ENST00000503033 1244 ntBASIC4.56□□□□□ -1.68
COL4A4P53420 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC4.56□□□□□ -1.68
COL4A4P53420 AL592156.1-201ENST00000508758 304 ntBASIC4.56□□□□□ -1.68
COL4A4P53420 RNA5SP360-201ENST00000516555 118 ntBASIC4.56□□□□□ -1.68
COL4A4P53420 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.56□□□□□ -1.68
COL4A4P53420 MTND2P7-201ENST00000521337 640 ntBASIC4.56□□□□□ -1.68
COL4A4P53420 AC007991.1-201ENST00000522680 631 ntBASIC4.56□□□□□ -1.68
COL4A4P53420 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC4.56□□□□□ -1.68
COL4A4P53420 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.56□□□□□ -1.68
COL4A4P53420 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC4.56□□□□□ -1.68
COL4A4P53420 AC068993.1-201ENST00000546724 589 ntBASIC4.56□□□□□ -1.68
COL4A4P53420 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
COL4A4P53420 AC020978.9-201ENST00000624380 1141 ntBASIC4.56□□□□□ -1.68
COL4A4P53420 AP001002.2-201ENST00000625137 386 ntBASIC4.56□□□□□ -1.68
COL4A4P53420 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL4A4P53420 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC4.56□□□□□ -1.68
COL4A4P53420 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.56□□□□□ -1.68
COL4A4P53420 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL4A4P53420 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL4A4P53420 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC4.55□□□□□ -1.68
COL4A4P53420 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL4A4P53420 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL4A4P53420 OR4A15-201ENST00000314706 1035 ntBASIC4.55□□□□□ -1.68
COL4A4P53420 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.55□□□□□ -1.68
COL4A4P53420 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.55□□□□□ -1.68
COL4A4P53420 RPL23AP46-201ENST00000438548 490 ntBASIC4.55□□□□□ -1.68
COL4A4P53420 NOTCH2P1-201ENST00000443481 624 ntBASIC4.55□□□□□ -1.68
COL4A4P53420 RPS27AP15-201ENST00000447672 466 ntBASIC4.55□□□□□ -1.68
COL4A4P53420 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC4.55□□□□□ -1.68
COL4A4P53420 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC4.55□□□□□ -1.68
COL4A4P53420 NPM1P21-201ENST00000513394 762 ntBASIC4.55□□□□□ -1.68
COL4A4P53420 RNA5SP73-201ENST00000516744 108 ntBASIC4.55□□□□□ -1.68
COL4A4P53420 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC4.55□□□□□ -1.68
COL4A4P53420 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.55□□□□□ -1.68
COL4A4P53420 AC093014.1-201ENST00000548926 724 ntBASIC4.55□□□□□ -1.68
COL4A4P53420 SLC25A36P1-201ENST00000590111 465 ntBASIC4.55□□□□□ -1.68
COL4A4P53420 AC112230.1-201ENST00000604342 547 ntBASIC4.55□□□□□ -1.68
COL4A4P53420 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.55□□□□□ -1.68
COL4A4P53420 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
COL4A4P53420 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL4A4P53420 CA1-225ENST00000626824 2405 ntTSL 5 BASIC4.55□□□□□ -1.68
COL4A4P53420 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL4A4P53420 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL4A4P53420 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
COL4A4P53420 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL4A4P53420 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL4A4P53420 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.54□□□□□ -1.68
COL4A4P53420 RPL5P32-201ENST00000454085 879 ntBASIC4.54□□□□□ -1.68
COL4A4P53420 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.54□□□□□ -1.68
COL4A4P53420 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.54□□□□□ -1.68
COL4A4P53420 RN7SL812P-201ENST00000493791 279 ntBASIC4.54□□□□□ -1.68
COL4A4P53420 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC4.54□□□□□ -1.68
COL4A4P53420 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.54□□□□□ -1.68
COL4A4P53420 BTG4P1-201ENST00000510421 183 ntBASIC4.54□□□□□ -1.68
COL4A4P53420 RN7SKP83-201ENST00000516512 178 ntBASIC4.54□□□□□ -1.68
COL4A4P53420 RNU6-352P-201ENST00000516908 107 ntBASIC4.54□□□□□ -1.68
COL4A4P53420 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL4A4P53420 SRGNP1-201ENST00000603392 451 ntBASIC4.54□□□□□ -1.68
COL4A4P53420 AL451086.1-201ENST00000605596 223 ntBASIC4.54□□□□□ -1.68
COL4A4P53420 AC025175.1-201ENST00000606482 759 ntBASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 93.9 ms