Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL5A3P25940 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL5A3P25940 LINC01013-205ENST00000458028 1345 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL5A3P25940 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL5A3P25940 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL5A3P25940 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC5.2□□□□□ -1.58
COL5A3P25940 CTSL3P-202ENST00000412179 788 ntBASIC5.2□□□□□ -1.58
COL5A3P25940 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC5.2□□□□□ -1.58
COL5A3P25940 MAP1LC3BP1-201ENST00000417653 379 ntBASIC5.2□□□□□ -1.58
COL5A3P25940 ARL4AP4-201ENST00000434170 518 ntBASIC5.2□□□□□ -1.58
COL5A3P25940 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC5.2□□□□□ -1.58
COL5A3P25940 FCF1P7-201ENST00000451185 558 ntBASIC5.2□□□□□ -1.58
COL5A3P25940 AC007688.1-201ENST00000475592 759 ntBASIC5.2□□□□□ -1.58
COL5A3P25940 ACTR3P3-201ENST00000480448 893 ntBASIC5.2□□□□□ -1.58
COL5A3P25940 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC5.2□□□□□ -1.58
COL5A3P25940 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC5.2□□□□□ -1.58
COL5A3P25940 MIR3944-201ENST00000581277 108 ntBASIC5.2□□□□□ -1.58
COL5A3P25940 ZNF402P-201ENST00000404435 3100 ntBASIC5.2□□□□□ -1.58
COL5A3P25940 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC5.2□□□□□ -1.58
COL5A3P25940 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC5.19□□□□□ -1.58
COL5A3P25940 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL5A3P25940 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
COL5A3P25940 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
COL5A3P25940 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC5.19□□□□□ -1.58
COL5A3P25940 AP001273.1-201ENST00000624493 3152 ntBASIC5.19□□□□□ -1.58
COL5A3P25940 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC5.19□□□□□ -1.58
COL5A3P25940 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL5A3P25940 RNA5SP22-201ENST00000365393 109 ntBASIC5.19□□□□□ -1.58
COL5A3P25940 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC5.19□□□□□ -1.58
COL5A3P25940 SNORD66.1-201ENST00000391230 76 ntBASIC5.19□□□□□ -1.58
COL5A3P25940 AL590704.1-201ENST00000402856 794 ntBASIC5.19□□□□□ -1.58
COL5A3P25940 AC233289.1-201ENST00000403700 508 ntBASIC5.19□□□□□ -1.58
COL5A3P25940 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC5.19□□□□□ -1.58
COL5A3P25940 RPL36AP10-201ENST00000421785 322 ntBASIC5.19□□□□□ -1.58
COL5A3P25940 RPL23AP25-201ENST00000430973 463 ntBASIC5.19□□□□□ -1.58
COL5A3P25940 GAPDHP36-201ENST00000480688 918 ntBASIC5.19□□□□□ -1.58
COL5A3P25940 SCARNA14-201ENST00000516903 136 ntBASIC5.19□□□□□ -1.58
COL5A3P25940 PAICSP4-201ENST00000517543 1253 ntBASIC5.19□□□□□ -1.58
COL5A3P25940 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC5.19□□□□□ -1.58
COL5A3P25940 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC5.19□□□□□ -1.58
COL5A3P25940 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL5A3P25940 AC006042.3-201ENST00000454684 1469 ntBASIC5.19□□□□□ -1.58
COL5A3P25940 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL5A3P25940 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
COL5A3P25940 AL929601.4-201ENST00000613011 1341 ntBASIC5.18□□□□□ -1.58
COL5A3P25940 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL5A3P25940 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL5A3P25940 AL731532.2-201ENST00000623542 1953 ntBASIC5.18□□□□□ -1.58
COL5A3P25940 HMGB3P19-201ENST00000403971 560 ntBASIC5.18□□□□□ -1.58
COL5A3P25940 CRYBB2P1-203ENST00000415709 538 ntBASIC5.18□□□□□ -1.58
COL5A3P25940 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC5.18□□□□□ -1.58
COL5A3P25940 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC5.18□□□□□ -1.58
COL5A3P25940 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC5.18□□□□□ -1.58
COL5A3P25940 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC5.18□□□□□ -1.58
COL5A3P25940 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC5.18□□□□□ -1.58
COL5A3P25940 RPL29P14-201ENST00000495837 428 ntBASIC5.18□□□□□ -1.58
COL5A3P25940 AL139099.1-201ENST00000497398 403 ntBASIC5.18□□□□□ -1.58
COL5A3P25940 AC090151.1-201ENST00000520784 730 ntBASIC5.18□□□□□ -1.58
COL5A3P25940 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC5.18□□□□□ -1.58
COL5A3P25940 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL5A3P25940 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL5A3P25940 AC021242.1-201ENST00000507315 2035 ntBASIC5.18□□□□□ -1.58
COL5A3P25940 Y_RNA.333-201ENST00000365274 102 ntBASIC5.17□□□□□ -1.58
COL5A3P25940 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC5.17□□□□□ -1.58
COL5A3P25940 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL5A3P25940 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC5.17□□□□□ -1.58
COL5A3P25940 AC018635.1-201ENST00000468292 1030 ntBASIC5.17□□□□□ -1.58
COL5A3P25940 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.17□□□□□ -1.58
COL5A3P25940 RPS3AP6-201ENST00000484430 795 ntBASIC5.17□□□□□ -1.58
COL5A3P25940 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
COL5A3P25940 AC027176.2-201ENST00000559166 746 ntBASIC5.17□□□□□ -1.58
COL5A3P25940 AC012468.1-201ENST00000604888 430 ntBASIC5.17□□□□□ -1.58
COL5A3P25940 MIR6868-201ENST00000611215 58 ntBASIC5.17□□□□□ -1.58
COL5A3P25940 AC019176.2-201ENST00000611579 315 ntBASIC5.17□□□□□ -1.58
COL5A3P25940 HSPD1P14-201ENST00000432666 1618 ntBASIC5.17□□□□□ -1.58
COL5A3P25940 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL5A3P25940 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL5A3P25940 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL5A3P25940 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL5A3P25940 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL5A3P25940 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC5.17□□□□□ -1.58
COL5A3P25940 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL5A3P25940 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
COL5A3P25940 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC5.17□□□□□ -1.58
COL5A3P25940 SNORA57.3-201ENST00000411095 141 ntBASIC5.17□□□□□ -1.58
COL5A3P25940 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC5.17□□□□□ -1.58
COL5A3P25940 AC008280.1-201ENST00000418851 412 ntBASIC5.17□□□□□ -1.58
COL5A3P25940 AL139247.1-201ENST00000422768 325 ntBASIC5.17□□□□□ -1.58
COL5A3P25940 AP000907.1-201ENST00000428428 510 ntBASIC5.17□□□□□ -1.58
COL5A3P25940 PRELID3BP10-201ENST00000431957 584 ntBASIC5.17□□□□□ -1.58
COL5A3P25940 AC083863.1-201ENST00000438811 231 ntBASIC5.17□□□□□ -1.58
COL5A3P25940 ANK3-207ENST00000460468 677 ntTSL 3 BASIC5.17□□□□□ -1.58
COL5A3P25940 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC5.17□□□□□ -1.58
COL5A3P25940 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC5.17□□□□□ -1.58
COL5A3P25940 DUXAP2-201ENST00000519198 589 ntBASIC5.17□□□□□ -1.58
COL5A3P25940 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC5.17□□□□□ -1.58
COL5A3P25940 AC091516.1-201ENST00000549191 703 ntBASIC5.17□□□□□ -1.58
COL5A3P25940 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC5.17□□□□□ -1.58
COL5A3P25940 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC5.17□□□□□ -1.58
COL5A3P25940 AC005255.1-201ENST00000593748 216 ntBASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms