Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC5.34□□□□□ -1.56
BDNFP23560 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC5.34□□□□□ -1.56
BDNFP23560 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.33□□□□□ -1.56
BDNFP23560 IRF5P1-201ENST00000504852 2164 ntBASIC5.33□□□□□ -1.56
BDNFP23560 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
BDNFP23560 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
BDNFP23560 AC053481.2-202ENST00000582394 1500 ntBASIC5.33□□□□□ -1.56
BDNFP23560 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
BDNFP23560 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.33□□□□□ -1.56
BDNFP23560 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
BDNFP23560 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC5.33□□□□□ -1.56
BDNFP23560 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
BDNFP23560 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
BDNFP23560 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.33□□□□□ -1.56
BDNFP23560 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
BDNFP23560 AC104446.1-201ENST00000613728 1321 ntBASIC5.33□□□□□ -1.56
BDNFP23560 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
BDNFP23560 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.33□□□□□ -1.56
BDNFP23560 RNU6-543P-201ENST00000362576 108 ntBASIC5.33□□□□□ -1.56
BDNFP23560 SNORD56.4-201ENST00000363883 71 ntBASIC5.33□□□□□ -1.56
BDNFP23560 AL133270.1-201ENST00000402635 279 ntBASIC5.33□□□□□ -1.56
BDNFP23560 SNORA77-201ENST00000408716 125 ntBASIC5.33□□□□□ -1.56
BDNFP23560 AL158825.1-201ENST00000414735 521 ntBASIC5.33□□□□□ -1.56
BDNFP23560 OR2AM1P-201ENST00000422137 422 ntBASIC5.33□□□□□ -1.56
BDNFP23560 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC5.33□□□□□ -1.56
BDNFP23560 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC5.33□□□□□ -1.56
BDNFP23560 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.33□□□□□ -1.56
BDNFP23560 MTCO1P43-201ENST00000431831 488 ntBASIC5.33□□□□□ -1.56
BDNFP23560 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC5.33□□□□□ -1.56
BDNFP23560 AC092170.1-201ENST00000440211 356 ntBASIC5.33□□□□□ -1.56
BDNFP23560 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC5.33□□□□□ -1.56
BDNFP23560 OR7E125P-201ENST00000443450 846 ntBASIC5.33□□□□□ -1.56
BDNFP23560 AL137845.2-201ENST00000444292 988 ntBASIC5.33□□□□□ -1.56
BDNFP23560 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
BDNFP23560 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC5.33□□□□□ -1.56
BDNFP23560 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC5.33□□□□□ -1.56
BDNFP23560 RPL21P103-201ENST00000479921 488 ntBASIC5.33□□□□□ -1.56
BDNFP23560 RN7SL319P-201ENST00000480656 221 ntBASIC5.33□□□□□ -1.56
BDNFP23560 RPL21P47-201ENST00000483696 477 ntBASIC5.33□□□□□ -1.56
BDNFP23560 RN7SL205P-201ENST00000490174 284 ntBASIC5.33□□□□□ -1.56
BDNFP23560 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC5.33□□□□□ -1.56
BDNFP23560 AC112518.2-201ENST00000508565 425 ntBASIC5.33□□□□□ -1.56
BDNFP23560 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC5.33□□□□□ -1.56
BDNFP23560 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC5.33□□□□□ -1.56
BDNFP23560 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC5.33□□□□□ -1.56
BDNFP23560 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC5.33□□□□□ -1.56
BDNFP23560 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC5.33□□□□□ -1.56
BDNFP23560 RNU2-30P-201ENST00000516209 141 ntBASIC5.33□□□□□ -1.56
BDNFP23560 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC5.33□□□□□ -1.56
BDNFP23560 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
BDNFP23560 OR5D15P-201ENST00000531671 942 ntBASIC5.33□□□□□ -1.56
BDNFP23560 AC008033.2-201ENST00000542626 177 ntBASIC5.33□□□□□ -1.56
BDNFP23560 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.33□□□□□ -1.56
BDNFP23560 CENPUP2-201ENST00000555897 1186 ntBASIC5.33□□□□□ -1.56
BDNFP23560 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC5.33□□□□□ -1.56
BDNFP23560 AC093510.2-201ENST00000562820 896 ntBASIC5.33□□□□□ -1.56
BDNFP23560 AC095057.3-201ENST00000567102 1157 ntBASIC5.33□□□□□ -1.56
BDNFP23560 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC5.33□□□□□ -1.56
BDNFP23560 MTCYBP13-201ENST00000578634 1093 ntBASIC5.33□□□□□ -1.56
BDNFP23560 MIR3934-201ENST00000579806 107 ntBASIC5.33□□□□□ -1.56
BDNFP23560 AP001180.3-201ENST00000582221 145 ntBASIC5.33□□□□□ -1.56
BDNFP23560 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC5.33□□□□□ -1.56
BDNFP23560 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC5.33□□□□□ -1.56
BDNFP23560 AP003117.2-201ENST00000606010 545 ntBASIC5.33□□□□□ -1.56
BDNFP23560 AC108359.1-201ENST00000616451 1211 ntBASIC5.33□□□□□ -1.56
BDNFP23560 AL163051.2-201ENST00000618976 735 ntBASIC5.33□□□□□ -1.56
BDNFP23560 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC5.33□□□□□ -1.56
BDNFP23560 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC5.33□□□□□ -1.56
BDNFP23560 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC5.33□□□□□ -1.56
BDNFP23560 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC5.33□□□□□ -1.56
BDNFP23560 AC002525.1-201ENST00000624392 1622 ntBASIC5.33□□□□□ -1.56
BDNFP23560 AC011978.2-201ENST00000569835 2054 ntBASIC5.33□□□□□ -1.56
BDNFP23560 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
BDNFP23560 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.33□□□□□ -1.56
BDNFP23560 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
BDNFP23560 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
BDNFP23560 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
BDNFP23560 OR51H2P-202ENST00000641424 3046 ntBASIC5.32□□□□□ -1.56
BDNFP23560 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC5.32□□□□□ -1.56
BDNFP23560 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC5.32□□□□□ -1.56
BDNFP23560 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
BDNFP23560 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
BDNFP23560 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
BDNFP23560 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
BDNFP23560 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC5.32□□□□□ -1.56
BDNFP23560 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.32□□□□□ -1.56
BDNFP23560 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
BDNFP23560 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC5.32□□□□□ -1.56
BDNFP23560 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
BDNFP23560 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
BDNFP23560 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
BDNFP23560 MIR124-3-201ENST00000384866 87 ntBASIC5.32□□□□□ -1.56
BDNFP23560 Z97832.1-201ENST00000402490 328 ntBASIC5.32□□□□□ -1.56
BDNFP23560 ATF1P1-201ENST00000406040 927 ntBASIC5.32□□□□□ -1.56
BDNFP23560 NUP35P2-201ENST00000416748 943 ntBASIC5.32□□□□□ -1.56
BDNFP23560 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC5.32□□□□□ -1.56
BDNFP23560 AC104837.2-201ENST00000427236 424 ntBASIC5.32□□□□□ -1.56
BDNFP23560 PRPF38AP2-201ENST00000438179 851 ntBASIC5.32□□□□□ -1.56
BDNFP23560 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC5.32□□□□□ -1.56
BDNFP23560 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms